Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C09
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...   120   2e-28
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    28   1.3  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   5.1  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score =  120 bits (290), Expect = 2e-28
 Identities = 65/191 (34%), Positives = 103/191 (53%)
 Frame = +3

Query: 171 PIVLWHGMGDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVE 350
           P+V+WHG+GDT   SF+L      ++K   G  V ++++G+N  ED + GY      Q++
Sbjct: 27  PVVIWHGLGDTPT-SFTLTEVSQRVQKLTKGA-VYAIRVGDNEFEDIKAGYLGKLEDQLD 84

Query: 351 YVCEKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPH 530
            VC+ +  +  LSNGF  +G SQG  F+RA+ Q C     +I+++++LG  H GI  IP 
Sbjct: 85  EVCDLIGNEDSLSNGFYALGLSQGGLFLRALAQTC--DAAKIRSLITLGSPHSGINTIPG 142

Query: 531 CGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTV 710
           C          V  +L    ++SW+QN +VQA Y+        Y  N+ FL  +NN   +
Sbjct: 143 CSPTNLICKAVVHSILGLGIWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNN-EVL 201

Query: 711 NKTYIQNLNNL 743
           +  Y +N+  L
Sbjct: 202 HDNYTRNIEKL 212


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 555 CDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVF 680
           C   RK+++    N  + +S V A Y+ DP+DE   +  S F
Sbjct: 211 CTVPRKIVHVLQKNKNLISSAVNAFYYRDPIDENYCDRMSKF 252


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 564 VRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVF 680
           + ++ N      W +NSL+    W D  D  T   N  F
Sbjct: 86  IDEIFNSTQVPEWAKNSLLDTNTWLDTSDFNTSFTNETF 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,691
Number of Sequences: 5004
Number of extensions: 65055
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)