Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C09
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856... 76 4e-14
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984... 61 8e-10
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 29 3.1
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 29 3.1
02_03_0192 - 16204575-16204582,16204798-16204966,16205708-162057... 29 3.1
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 29 5.4
08_01_0588 + 5222536-5222656,5222887-5223440 28 7.1
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 28 9.4
>03_01_0008 +
84955-85048,85165-85225,85375-85426,85554-85661,
85662-85715,86140-86190,86348-86410,87048-87113,
87190-87228,87493-87615,88251-88343,88437-88661
Length = 342
Score = 75.8 bits (178), Expect = 4e-14
Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +3
Query: 381 KLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 560
+LSNG+N++G SQG RAVV+ C P +KN +SLGG H G +P CG+ C
Sbjct: 111 ELSNGYNIVGLSQGNLIGRAVVEFCDDG-PPVKNFISLGGPHAGTASVPLCGS--GIFCI 167
Query: 561 DVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINN--VRTVNKTYIQNL 734
L+ Y+ +VQ L + Y P D Y FL +NN N TY +
Sbjct: 168 LADSLIKMEIYSDYVQAHLAPSGYMKIPTDISDYLKGCRFLPKLNNELPGERNATYKERF 227
Query: 735 NNLXRFVLVM 764
++L VL+M
Sbjct: 228 SSLENLVLIM 237
>10_08_0939 +
21696941-21697049,21697171-21697255,21698385-21698457,
21698553-21698609,21698660-21698713,21699196-21699246,
21699441-21699503,21700453-21700518,21700625-21700663,
21702190-21702271,21703479-21703536,21703698-21703914,
21704248-21704697
Length = 467
Score = 61.3 bits (142), Expect = 8e-10
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Frame = +3
Query: 159 ATPTPIVLWHGMGDTCCMSFSLGSFKIFLEK--NIPGVYVLSLQIGNNTVEDFENGYFMN 332
A+ P ++ HG+GD C + + SF L + G +L++ + + + + M
Sbjct: 27 ASAVPFIVLHGIGDQC-ENGGMASFTEMLGEWSGSKGYCILNVFLLSEIGRGAWDSWLMP 85
Query: 333 PNLQVEYVCEKLAAD------------PKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQI 476
Q + VC+K+ + +L G++++G SQG RAV++ C P +
Sbjct: 86 LQEQADTVCKKVIQNLHHFYLCTVKKMKELRKGYSIVGLSQGNLIGRAVIEYCDGG-PPV 144
Query: 477 KNMVSLGGQHQGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDP 644
KN +S+GG H G +P CG+ C + L+ Y+++VQ L + Y P
Sbjct: 145 KNFISIGGPHAGTASVPLCGS--GIVCVLIDALIKLEIYSNYVQAHLAPSGYLKIP 198
>07_03_1546 +
27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -3
Query: 412 KPMTLNPFDSFGSAANFSHTYSTWRFGFMKYPFSKSSTVLLPIWRDRT*TPGMFFS 245
+P+ P S GS+A +Y TW F + SS + +W R P FS
Sbjct: 159 EPVVFPPLKSVGSSAQAEISYLTWNPKFQHILATASSNGMTVVWDLRNQKPLTSFS 214
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/106 (23%), Positives = 49/106 (46%)
Frame = +3
Query: 360 EKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 539
E+LA + +L F +MGFS G + + + ++ H+L + + +G G+P
Sbjct: 154 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYWWS--GLP---- 207
Query: 540 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSV 677
+ + + L + WV + L TYW + ++ + A+SV
Sbjct: 208 -SNMSWHVWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 250
>02_03_0192 -
16204575-16204582,16204798-16204966,16205708-16205785,
16206442-16206567,16206723-16206968,16207368-16207487,
16207947-16208198,16208441-16208517,16208581-16208680,
16210071-16210511
Length = 538
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 169 HPSSCGTAWVTHAACPLVLVPSKYS*RRTYL 261
HP CG A A CPL L+P + R +L
Sbjct: 5 HPPPCGVAPAAAATCPLFLLPRRSLSRSLHL 35
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/106 (23%), Positives = 49/106 (46%)
Frame = +3
Query: 360 EKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 539
E+LA + +L F +MGFS G + + + ++ H+L + + +G G+P
Sbjct: 121 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYWWS--GLP---- 174
Query: 540 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSV 677
+ + + L + WV + L TYW + ++ + A+SV
Sbjct: 175 -SNVSWHAWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 217
>08_01_0588 + 5222536-5222656,5222887-5223440
Length = 224
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 436 RIN*HPCEKPMTLNPFDSFGSAANFSHTYST 344
R+N PC+ PM +N D F +AA F ST
Sbjct: 42 RVNGFPCKNPMEVNS-DDFFNAAKFDMPRST 71
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 336 NLQVEYVCEKLAADPKLSNGFNV 404
N++ E KLA +PK+SNG +V
Sbjct: 1606 NMKAEKAAAKLAKEPKISNGVSV 1628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,773,665
Number of Sequences: 37544
Number of extensions: 406759
Number of successful extensions: 850
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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