Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C09
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07) 98 8e-21
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_53079| Best HMM Match : TPR_1 (HMM E-Value=0) 29 3.1
SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073) 29 5.4
SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0) 28 9.5
SB_8451| Best HMM Match : GRP (HMM E-Value=9.6) 28 9.5
>SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07)
Length = 144
Score = 97.9 bits (233), Expect = 8e-21
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Frame = +3
Query: 480 NMVSLGGQHQGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERT 659
N++S GGQHQG+YG PHC C+ VR+LLN AY SLVQA YWHDP++E+
Sbjct: 3 NLISFGGQHQGVYGFPHCPGDNSTLCNYVRELLNIGAY-----VSLVQAEYWHDPMNEKE 57
Query: 660 YEANSVFLADINN-----------VRTVNKTYIQNLNNLXRFVLVM 764
Y S+FLADIN ++T N TY +NL L FV+VM
Sbjct: 58 YRDKSIFLADINQEKFTLQRLIFVLQTKNPTYKENLMKLKNFVMVM 103
>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 221 SWFLQNIPREEHTWCLCSVS 280
+WF + R +H++CLCSVS
Sbjct: 815 TWFAGELMRRKHSYCLCSVS 834
>SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1105
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 357 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 238
++ LGD+G ++++N Y +FGE + V S++GI
Sbjct: 238 VYKSLGDNGQAMVNYKNALCIYEKFGEEREQADVYSNIGI 277
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 357 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 238
I+ LGD G ++++N Y +FGE + V S++G+
Sbjct: 158 IYSSLGDDGQAILNYKNALCIYEKFGEKREQADVYSNIGL 197
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 171 PIVLWHGMGDTCCMSFSLGSFKIFLEKNIPGVYVL-SLQIGNNTVEDFENGYFMN-PNLQ 344
P +HG+ + + K F E+ + G L SLQ+ NN + E G F N L+
Sbjct: 156 PETTFHGLAALQRLRLHNNNLKTFSERTLQGTLSLKSLQLNNNLLTRIEPGTFRNLRGLE 215
Query: 345 VEYV 356
+ Y+
Sbjct: 216 ILYL 219
>SB_53079| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 772
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 357 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 238
+ I LGD+G ++F+N Y +FGE + V +++GI
Sbjct: 310 VFISLGDNGQAMVNFKNALCIYEKFGEECKQADVYNNIGI 349
>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 420 GCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETC 557
GC+ + ++Q G+KL ++ + G + Y C ALRHE C
Sbjct: 669 GCKEVLTLLQNFGNKLTKLDLTFNSIGDEEAKY---ICEALRHENC 711
>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 372 PLTSHIHIQLGDSGS*NIHFQNLQQYYCQFGETEHKH 262
PLT H HI+L + +I + Q + + T+H H
Sbjct: 206 PLTQHTHIRLPSTQHTHIRLPSTQHSHIRLPSTQHSH 242
>SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)
Length = 582
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 212 HAACVTHAVPQDDGCRRCAY 153
H C H V + DGCR C Y
Sbjct: 81 HKPCCHHKVEKPDGCRLCRY 100
>SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -1
Query: 357 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 238
+++ LGD+G ++++N Y +FGE + V +++G+
Sbjct: 157 LYMTLGDNGQAMVNYKNALCIYEKFGEERKQADVYNNIGV 196
>SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1137
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 357 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLG 241
++ LGD+G ++++N Y +FGE + V +S+G
Sbjct: 190 VYESLGDNGQAMVNYKNALCIYEKFGEERKQADVYNSIG 228
>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
Length = 158
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 576 VASSHHHMFRVSRHHNEVCHRCLGADLR 493
+ SSHHH H + CH+ + +R
Sbjct: 108 ITSSHHHHHHHHHHQHRGCHKAVAGHVR 135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,572,999
Number of Sequences: 59808
Number of extensions: 506600
Number of successful extensions: 1092
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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