Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C08
(692 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q86NN8 Cluster: RH49324p; n=16; Arthropoda|Rep: RH49324... 156 4e-37
UniRef50_A6N9T0 Cluster: Cytochrome c oxidase polyprotein Vb; n=... 141 1e-32
UniRef50_UPI0000584579 Cluster: PREDICTED: similar to cytochrome... 121 2e-26
UniRef50_A7SG22 Cluster: Predicted protein; n=1; Nematostella ve... 101 2e-20
UniRef50_P90849 Cluster: Putative uncharacterized protein cco-1;... 100 3e-20
UniRef50_P10606 Cluster: Cytochrome c oxidase subunit 5B, mitoch... 99 5e-20
UniRef50_Q9VMB8 Cluster: CG11043-PA; n=6; Sophophora|Rep: CG1104... 89 1e-16
UniRef50_Q5DB28 Cluster: SJCHGC01711 protein; n=2; Schistosoma j... 71 3e-11
UniRef50_P79010 Cluster: Cytochrome c oxidase polypeptide IV, mi... 62 9e-09
UniRef50_P06809 Cluster: Cytochrome c oxidase polypeptide IV, mi... 58 2e-07
UniRef50_P92683 Cluster: Cytochrome c oxidase subunit Vb; n=7; M... 57 5e-07
UniRef50_Q2UEE5 Cluster: Cytochrome c oxidase; n=1; Aspergillus ... 54 3e-06
UniRef50_Q1EMP4 Cluster: Cytochrome c oxidase subunit 5b; n=1; P... 54 4e-06
UniRef50_A7P5P3 Cluster: Chromosome chr4 scaffold_6, whole genom... 52 2e-05
UniRef50_Q5DFC5 Cluster: SJCHGC06267 protein; n=1; Schistosoma j... 48 2e-04
UniRef50_P04037 Cluster: Cytochrome c oxidase polypeptide IV, mi... 48 2e-04
UniRef50_Q9LW15 Cluster: Cytochrome c oxidase subunit Vb-like pr... 46 7e-04
UniRef50_A5DU86 Cluster: Cytochrome c oxidase polypeptide IV, mi... 46 0.001
UniRef50_Q6CS03 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 45 0.002
UniRef50_Q01GC2 Cluster: Cytochrome c oxidase, subunit Vb/COX4; ... 42 0.019
UniRef50_Q5K8Q1 Cluster: Cytochrome c oxidase polypeptide iv, mi... 40 0.076
UniRef50_A5B9Z5 Cluster: Putative uncharacterized protein; n=1; ... 37 0.54
UniRef50_Q28KY0 Cluster: NADH dehydrogenase; n=8; Proteobacteria... 33 6.6
UniRef50_Q1BYJ1 Cluster: Methyltransferase FkbM; n=2; Burkholder... 33 6.6
UniRef50_A5ZB52 Cluster: Putative uncharacterized protein; n=2; ... 33 8.8
>UniRef50_Q86NN8 Cluster: RH49324p; n=16; Arthropoda|Rep: RH49324p -
Drosophila melanogaster (Fruit fly)
Length = 154
Score = 156 bits (379), Expect = 4e-37
Identities = 70/120 (58%), Positives = 87/120 (72%)
Frame = +2
Query: 80 TMASLCXQILXANAFXSVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNM 259
TMAS+C ++ A + T R KMM DPLEHATG+E++ELL AGND+PF+M
Sbjct: 34 TMASICGRMALRAAARQNVAYTPVRFC--KMMNDPLEHATGIEKRELLLKAAGNDNPFDM 91
Query: 260 KVVKKSAGTRENPTLVPSCFDARIVGCICEEHATAITWLWLHKDQPRRCECGHWYKLIEK 439
KV K+ AGT+ENP L+PS FDARIVGCICEE T + W+WL K +RCECGHW+KL+EK
Sbjct: 92 KVFKRGAGTKENPNLIPSAFDARIVGCICEEDQTYVQWMWLQKGNQKRCECGHWFKLVEK 151
>UniRef50_A6N9T0 Cluster: Cytochrome c oxidase polyprotein Vb; n=4;
Arthropoda|Rep: Cytochrome c oxidase polyprotein Vb -
Ornithodoros parkeri
Length = 122
Score = 141 bits (342), Expect = 1e-32
Identities = 62/122 (50%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Frame = +2
Query: 83 MASLCXQILXANAFXSVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMK 262
MASL + L NA ++I+ R +K + D E+A G E+ EL A+ AGN+DPF+M+
Sbjct: 1 MASLVGRSLVKNARRALIINARRYKSEEKRIFDAREYACGKEKLELDAIAAGNEDPFDMR 60
Query: 263 VVKKSAGTRENPTLVPSCFDARIVGCICEEHATAITWLWLHKDQPRRCECGHWYKLIE-K 439
V K+ GT++NP L+PS + R++GCICEE AT I W+WLH+ PRRCECGHW+KL++ K
Sbjct: 61 VFKRGPGTKDNPNLIPSYLEKRMIGCICEEDATVINWMWLHRGDPRRCECGHWFKLVDAK 120
Query: 440 PL 445
PL
Sbjct: 121 PL 122
>UniRef50_UPI0000584579 Cluster: PREDICTED: similar to cytochrome c
oxidase, subunit VB, putative; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to cytochrome c
oxidase, subunit VB, putative - Strongylocentrotus
purpuratus
Length = 128
Score = 121 bits (291), Expect = 2e-26
Identities = 50/88 (56%), Positives = 64/88 (72%)
Frame = +2
Query: 173 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEE 352
+PD EHATGLE+KEL ++AG+ DPF + V + +AGT+ P V S F RIVGCICEE
Sbjct: 32 IPDNFEHATGLEKKELDRIKAGDSDPFQLNVRRVAAGTKTKPVEVTSAFQKRIVGCICEE 91
Query: 353 HATAITWLWLHKDQPRRCECGHWYKLIE 436
T I W+WL+ +P+RCECGHW+KL E
Sbjct: 92 EQTHINWMWLYTGEPQRCECGHWFKLQE 119
>UniRef50_A7SG22 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 91
Score = 101 bits (241), Expect = 2e-20
Identities = 42/81 (51%), Positives = 59/81 (72%)
Frame = +2
Query: 188 EHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEEHATAI 367
E ATGLE+ E AL AG +DPF +K+ GT++NPT+VPS ++ RIVGC+CEE AT I
Sbjct: 1 EQATGLEKAEYDALVAGYEDPFRLKMANGPPGTKDNPTIVPSGYEERIVGCVCEEDATMI 60
Query: 368 TWLWLHKDQPRRCECGHWYKL 430
W+ L P+RC+CG++++L
Sbjct: 61 RWMLLKAGPPQRCDCGNYFQL 81
>UniRef50_P90849 Cluster: Putative uncharacterized protein cco-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cco-1 - Caenorhabditis elegans
Length = 132
Score = 100 bits (240), Expect = 3e-20
Identities = 44/88 (50%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = +2
Query: 176 PDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARIVGCICEE 352
PDPLEHATG E+K LLA AG DD + KV ++ A T++ P LVPS +D RI+GC+CE+
Sbjct: 40 PDPLEHATGREKKMLLARLAG-DDRYEPKVYYRAEASTKQKPNLVPSHYDFRIIGCMCEQ 98
Query: 353 HATAITWLWLHKDQPRRCECGHWYKLIE 436
+ + ++ + K P+RCECGHW+K ++
Sbjct: 99 DSGHVNFMTIRKGDPKRCECGHWFKGVD 126
>UniRef50_P10606 Cluster: Cytochrome c oxidase subunit 5B,
mitochondrial precursor; n=38; Euteleostomi|Rep:
Cytochrome c oxidase subunit 5B, mitochondrial precursor
- Homo sapiens (Human)
Length = 129
Score = 99 bits (238), Expect = 5e-20
Identities = 47/92 (51%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Frame = +2
Query: 173 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEE 352
+P E ATGLER+ +LA + G D P+N+ K ++GTRE+P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 353 HATAITWLWLHKDQPRRC-ECGHWYKLIEKPL 445
T++ W WLHK + +RC CG YKL+ + L
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPQQL 127
>UniRef50_Q9VMB8 Cluster: CG11043-PA; n=6; Sophophora|Rep:
CG11043-PA - Drosophila melanogaster (Fruit fly)
Length = 154
Score = 88.6 bits (210), Expect = 1e-16
Identities = 36/84 (42%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Frame = +2
Query: 197 TGLERKELLALQAGNDDPFNM-KVVKKSAGTRENPTLVPSCFDARIVGCICEEHATAITW 373
TG++++E+L + G +DP+ KV+++ +G +PT+VPS FDAR+VGC+C + W
Sbjct: 70 TGIQKREMLLAKQGCEDPWGFSKVIRRGSGRENDPTVVPSAFDARLVGCLCLDDRLP-KW 128
Query: 374 LWLHKDQ-PRRCECGHWYKLIEKP 442
+W+ KD+ P+RCECGH++ L P
Sbjct: 129 MWIEKDEGPKRCECGHYFILKNVP 152
>UniRef50_Q5DB28 Cluster: SJCHGC01711 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC01711 protein - Schistosoma
japonicum (Blood fluke)
Length = 143
Score = 70.9 bits (166), Expect = 3e-11
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 185 LEHATGLERKELLALQAGNDDPFNMKVVK-KSAGTRENPTLVPSCFDARIVGCICEEHAT 361
L A + EL++ DPF ++ ++ + +R++P L+PS R+VGCICE A
Sbjct: 49 LTEAVNTKNFELVSKIVTEQDPFEVRRIRIPTNNSRKSPNLIPSQSGRRMVGCICEPEAD 108
Query: 362 AITWLWLHKDQPRRCECGHWYKLIE 436
+I WL L K P +C CG+W+++++
Sbjct: 109 SINWLELEKGDPVQCYCGYWFQIVD 133
>UniRef50_P79010 Cluster: Cytochrome c oxidase polypeptide IV,
mitochondrial precursor; n=1; Schizosaccharomyces
pombe|Rep: Cytochrome c oxidase polypeptide IV,
mitochondrial precursor - Schizosaccharomyces pombe
(Fission yeast)
Length = 164
Score = 62.5 bits (145), Expect = 9e-09
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Frame = +2
Query: 155 GYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARI 331
G D +P LE ATGLER ELL+ +G D F+MK + S GT +P +V S R
Sbjct: 59 GGRDGEVPTDLEQATGLERYELLSELSGR-DAFDMKPLDASRKGTLTDPIMVTSLDPYRH 117
Query: 332 VGCICEEHAT-AITWLWLHKDQPRRC-ECGHWYKL 430
+GC + + W+ ++KD+ RRC ECG YKL
Sbjct: 118 IGCTGSPSGSHNLIWMTVYKDKLRRCPECGSVYKL 152
>UniRef50_P06809 Cluster: Cytochrome c oxidase polypeptide IV,
mitochondrial precursor; n=16; Pezizomycotina|Rep:
Cytochrome c oxidase polypeptide IV, mitochondrial
precursor - Neurospora crassa
Length = 186
Score = 58.4 bits (135), Expect = 2e-07
Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Frame = +2
Query: 155 GYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARI 331
G A +P LE ATGLER E+L G D F+MK + S GT ENP V S D +
Sbjct: 57 GAAPGTVPTDLEQATGLERLEILGKMEG-VDVFDMKPLDASRRGTMENPISVRSAGDEQY 115
Query: 332 VGCI-CEEHATAITWLWLHKDQP-RRC-ECGHWYKL 430
GC + + WL + +++P RC ECG+ YK+
Sbjct: 116 AGCTGFPADSHNVIWLTMTRERPVERCPECGNVYKM 151
>UniRef50_P92683 Cluster: Cytochrome c oxidase subunit Vb; n=7;
Magnoliophyta|Rep: Cytochrome c oxidase subunit Vb -
Oryza sativa subsp. japonica (Rice)
Length = 169
Score = 56.8 bits (131), Expect = 5e-07
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +2
Query: 179 DPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEEHA 358
D + ATGLER+EL A G + F+M GT+E P ++ S ++ RIVGC E
Sbjct: 64 DVMPIATGLEREELAAELKG-EKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEGE 122
Query: 359 TA--ITWLWLHKDQPRRCE-CGHWYKL 430
+ W WL KD+P C C ++ L
Sbjct: 123 DEHDVVWFWLKKDEPHECPVCSQYFVL 149
>UniRef50_Q2UEE5 Cluster: Cytochrome c oxidase; n=1; Aspergillus
oryzae|Rep: Cytochrome c oxidase - Aspergillus oryzae
Length = 208
Score = 54.4 bits (125), Expect = 3e-06
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = +2
Query: 173 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARIVGCI-C 346
+P +E ATGLER EL+ G D F+M+ + S GT ENP +V D + GC
Sbjct: 66 VPSDIEQATGLERLELVGKMQG-IDIFDMRPLDASRKGTLENPIIVNGAGDEQYAGCTGF 124
Query: 347 EEHATAITWLWLHKDQP-RRC-ECGHWYKL 430
+ + WL + +D+P RC ECG+ KL
Sbjct: 125 PADSHTVNWLTVSRDRPIERCGECGNVVKL 154
>UniRef50_Q1EMP4 Cluster: Cytochrome c oxidase subunit 5b; n=1;
Plantago major|Rep: Cytochrome c oxidase subunit 5b -
Plantago major (Common plantain)
Length = 162
Score = 53.6 bits (123), Expect = 4e-06
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Frame = +2
Query: 128 SVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLV 307
S L G K D + TG ER+EL A G D + + GT+E P +V
Sbjct: 41 SFALFNTESGNVAKRPEDVIPIVTGHEREELQAELQGKDI-LEINYPEGPFGTKEEPAVV 99
Query: 308 PSCFDARIVGC--ICEEHATAITWLWLHKDQPRRCE-CGHWYKL 430
S +D RIVGC E + W WL K +P C C ++ L
Sbjct: 100 KSYYDKRIVGCPGADGEDEHDVVWFWLEKGKPHECPVCSQYFVL 143
>UniRef50_A7P5P3 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 194
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 281 GTRENPTLVPSCFDARIVGCICEEHATA--ITWLWLHKDQPRRCE-CGHWYKL 430
GT+E P +V S +D RIVGC E + W WLHKDQP C C +KL
Sbjct: 130 GTKEAPAIVKSFYDRRIVGCPGGEGEDEHDVVWFWLHKDQPHVCPVCSQHFKL 182
>UniRef50_Q5DFC5 Cluster: SJCHGC06267 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC06267 protein - Schistosoma
japonicum (Blood fluke)
Length = 219
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +2
Query: 182 PLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVG-CICEEHA 358
P++ +KELL + + + +K S+ +E+P LV SC D R V C C H
Sbjct: 57 PVKSKLSQLQKELLWEVSQAEPAIDHGKIKPSS--KEDPNLV-SCSDIRSVQMCHCSPHD 113
Query: 359 TAITWLWLHKDQPRRCECGHWYKLIEK 439
+ +L L+++ P RC CG+W+ L+++
Sbjct: 114 RYVNYLVLYRNLPTRCFCGNWFLLVDE 140
>UniRef50_P04037 Cluster: Cytochrome c oxidase polypeptide IV,
mitochondrial precursor; n=4; Saccharomycetales|Rep:
Cytochrome c oxidase polypeptide IV, mitochondrial
precursor - Saccharomyces cerevisiae (Baker's yeast)
Length = 155
Score = 48.0 bits (109), Expect = 2e-04
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = +2
Query: 155 GYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARI 331
G + +P L+ TGL R ELL G D F+ K + S GT ++P ++ S D R
Sbjct: 50 GAKEGTVPTDLDQETGLARLELLGKLEG-IDVFDTKPLDSSRKGTMKDPIIIESYDDYRY 108
Query: 332 VGCICEEHAT-AITWLWLHKDQPRRC-ECGHWYKL 430
VGC + I WL ++ RC ECG YKL
Sbjct: 109 VGCTGSPAGSHTIMWLKPTVNEVARCWECGSVYKL 143
>UniRef50_Q9LW15 Cluster: Cytochrome c oxidase subunit Vb-like
protein; n=9; core eudicotyledons|Rep: Cytochrome c
oxidase subunit Vb-like protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 176
Score = 46.4 bits (105), Expect = 7e-04
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +2
Query: 161 ADKMMPDPLEHATGLERKELLALQAGN--DDPFNMKVVKKSAGTRENPTLVPSCFDARIV 334
A K + D + ATG E++EL A G DD + + GT+E P +V S +D RIV
Sbjct: 64 ATKKVEDVMPIATGHEKEELEAELEGRRLDD---IDFPEGPFGTKEAPAIVKSYYDKRIV 120
Query: 335 GCICEEHATA--ITWLWLHKDQPRRCE-CGHWYKL 430
GC E + W WL K + C C +++L
Sbjct: 121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFEL 155
>UniRef50_A5DU86 Cluster: Cytochrome c oxidase polypeptide IV,
mitochondrial; n=5; Saccharomycetales|Rep: Cytochrome c
oxidase polypeptide IV, mitochondrial - Lodderomyces
elongisporus (Yeast) (Saccharomyces elongisporus)
Length = 158
Score = 45.6 bits (103), Expect = 0.001
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Frame = +2
Query: 128 SVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKV-VKKSAGTRENPTL 304
S+I P A+ G +P + ATGL+R ELL + G D F+M++ + + GT E+P L
Sbjct: 50 SLIGPGAKPG----TIPTDFDQATGLQRLELLGKKEGVD-VFDMEMPITEGKGTMEDPFL 104
Query: 305 VPSCFDARIVGCI-CEEHATAITWLWLHKDQPRRC-ECG 415
VP+ R VGC E W+ + + RC CG
Sbjct: 105 VPTYIGYRYVGCKGTAEVDHKPYWMKVEEGHVSRCWRCG 143
>UniRef50_Q6CS03 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome D of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=3; Saccharomycetales|Rep: Kluyveromyces lactis
strain NRRL Y-1140 chromosome D of strain NRRL Y- 1140
of Kluyveromyces lactis - Kluyveromyces lactis (Yeast)
(Candida sphaerica)
Length = 154
Score = 44.8 bits (101), Expect = 0.002
Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Frame = +2
Query: 155 GYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARI 331
G D +P L+ ATGL R ELL G + F+ K + S GT ENP +V S D R
Sbjct: 50 GAKDGEVPTELDQATGLARLELLGKLEG-IEVFDTKPLDSSRIGTMENPIIVESYDDYRY 108
Query: 332 VGCICEEHAT-AITWLWLHKDQPRRC-ECGHWYKL 430
VG + + WL Q RC E G YKL
Sbjct: 109 VGATGSPAGSHNVMWLKPTDGQVARCWETGCVYKL 143
>UniRef50_Q01GC2 Cluster: Cytochrome c oxidase, subunit Vb/COX4;
n=2; Ostreococcus|Rep: Cytochrome c oxidase, subunit
Vb/COX4 - Ostreococcus tauri
Length = 202
Score = 41.5 bits (93), Expect = 0.019
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +2
Query: 185 LEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEEHATA 364
LE+ATGL ++EL G D + ++ GT E+P +V S + R+VG + +
Sbjct: 33 LENATGLYKEELEGKLRGEDIFDHHAFLRAPQGTEESPCVVESTMEYRVVGSPDPDDDSI 92
Query: 365 ITWLWLHKDQPRRCECGHWY 424
I W L + P R W+
Sbjct: 93 IHWGRLEEGAPPRNIGSEWF 112
>UniRef50_Q5K8Q1 Cluster: Cytochrome c oxidase polypeptide iv,
mitochondrial, putative; n=3; Basidiomycota|Rep:
Cytochrome c oxidase polypeptide iv, mitochondrial,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 212
Score = 39.5 bits (88), Expect = 0.076
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Frame = +2
Query: 173 MPDPLEHATGLERKELLALQAGNDDPFNMKVVK-KSAGTRENPTLVPSCFDARIVGCI-- 343
+P+ +TGLER ELL G D F+MK ++ GT + P + S F R +GC
Sbjct: 108 VPNDENQSTGLERFELLGNLEG-VDVFDMKPLEITRLGTVDEPIPIYSLFPERQIGCTGF 166
Query: 344 -CEEHATAITWLWL-HKDQPRRC-ECGHWYKL 430
+ H T WL + H + RC ECG Y L
Sbjct: 167 PVDSHDT--IWLNVNHTLKNHRCPECGSVYTL 196
>UniRef50_A5B9Z5 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 110
Score = 36.7 bits (81), Expect = 0.54
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 287 RENPTLVPSCFDARIVGCICEEHATA--ITWLWLHKDQPRRCE-CGHWYKL 430
RE P +V S +D RIVGC E + W WL K + C C ++ +
Sbjct: 17 REAPAVVQSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSHECPVCSQYFTM 67
>UniRef50_Q28KY0 Cluster: NADH dehydrogenase; n=8;
Proteobacteria|Rep: NADH dehydrogenase - Jannaschia sp.
(strain CCS1)
Length = 952
Score = 33.1 bits (72), Expect = 6.6
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 288 VKTQLWYLPALMLVLLDAFVKNTLQP 365
++ WYLPAL+L+LL AF K+ P
Sbjct: 205 IRASEWYLPALILILLGAFTKSAQFP 230
>UniRef50_Q1BYJ1 Cluster: Methyltransferase FkbM; n=2; Burkholderia
cenocepacia|Rep: Methyltransferase FkbM - Burkholderia
cenocepacia (strain AU 1054)
Length = 1644
Score = 33.1 bits (72), Expect = 6.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 128 SVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDP 250
S+++PT + +M + L HAT KE++ + G+DDP
Sbjct: 708 SIVIPTKNKPELLRMCLEGLLHATDYPNKEVVIVDTGSDDP 748
>UniRef50_A5ZB52 Cluster: Putative uncharacterized protein; n=2;
Bacteroides caccae ATCC 43185|Rep: Putative
uncharacterized protein - Bacteroides caccae ATCC 43185
Length = 540
Score = 32.7 bits (71), Expect = 8.8
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 260 KVVKKSAGTRENPTLVPSCFDARIVGCICEEHATAITWLWLHKDQPRRCECGHWYKLIEK 439
K+V+K+ +N V + + I+G E H IT +W DQP E W IEK
Sbjct: 188 KLVEKAGQAWDNDPRV-AYVEMGIIGEFGEHHDPDITTVWAPHDQPNHVENRTWLPGIEK 246
Query: 440 PL 445
L
Sbjct: 247 VL 248
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,295,502
Number of Sequences: 1657284
Number of extensions: 15079482
Number of successful extensions: 32903
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 31593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32889
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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