Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C06
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    28   1.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   2.9  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   2.9  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   6.7  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   6.7  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 162 KEQKPEVCHLLXDYLEAIKKDFEKAAKVYKSNCLEYKFGKSCLKIGN 302
           K Q+  + + +    ++IK   EKA    KSN L+  FGKS   I N
Sbjct: 389 KVQRTHLANDISSEKQSIKSANEKAYVTPKSNSLKPGFGKSLSDISN 435


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 96  KKEDEVKDYIENIGIEYRFGCYKEQKPEVCHLLXDYLEAIKKDFEKAAKVYK 251
           K+ +++K YIE +G+      Y+E K  V + L    + +KKD +   + ++
Sbjct: 214 KEREKIKSYIEMLGLAKMLVIYRE-KTNVFNQLRADKKKLKKDLKDLVEEFQ 264


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 216 KKDFEKAAKVYKSNCLEYKFGKS-CLKI 296
           KK++EKA  V  +N  +YK G++ CL+I
Sbjct: 777 KKNYEKALSVLVTNIHDYKGGEAYCLQI 804


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 183 CHLLXDYLEAIKKDFEKAAKVY 248
           CH+  D+LEA++   E+  K +
Sbjct: 564 CHIYNDHLEALQTQLERVPKAF 585


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 291 SGTTFRIYILNNYFCTL 241
           S TTF I+  N+YFC L
Sbjct: 162 SNTTFSIWSANDYFCLL 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,170
Number of Sequences: 5004
Number of extensions: 62211
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)