Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C06
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29993| Best HMM Match : MORN (HMM E-Value=0.37)                    120   1e-27
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                47   1e-05
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)                31   1.4  
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)                 30   2.4  
SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)        28   9.5  

>SB_29993| Best HMM Match : MORN (HMM E-Value=0.37)
          Length = 265

 Score =  120 bits (290), Expect = 1e-27
 Identities = 71/219 (32%), Positives = 109/219 (49%)
 Frame = +3

Query: 96  KKEDEVKDYIENIGIEYRFGCYKEQKPEVCHLLXDYLEAIKKDFEKAAKVYKSNCLEYKF 275
           K     K+Y + +G  ++  C   +K E CH L ++  A++KD  KA   +K  C E   
Sbjct: 54  KSAAAAKEYAKQLGDIFKHECELSRKKESCHQLAEFYLAVEKDVHKAKDTFKLACEELGL 113

Query: 276 GKSCLKIGNYTLIGRGREKGDPAEALIYFEKGCELNDPGACLHAGMLLTATGPGVNIQRD 455
            +SC  +GN  L    +E  DP EAL  F   CE    GAC +AG++  +     +I++D
Sbjct: 114 MESCFALGNLHL--TSKELKDPEEALRLFGIACENKQAGACNNAGLIYQSGIEQTHIKKD 171

Query: 456 VPKGYNCLKKSCDQNDDMACHYLSGMYLTGVPKNVQDFNPHNPEKNKNIDYLIKPDKKEA 635
           + K      KSC + +   C  LS +YL G     +D               I  D K+A
Sbjct: 172 INKAMEFFGKSCTEGNKNGCFNLSAIYLMG-----RDG--------------IAKDMKKA 212

Query: 636 FRFAKRACELGNMFACANVSLMYKKGDGVEKNQDESXRF 752
           F ++ + C++G+ + CANVS MY  GDGV KN +E+ ++
Sbjct: 213 FDYSMKGCQMGHPWGCANVSRMYALGDGVAKNPEEAAKY 251


>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 18/51 (35%), Positives = 35/51 (68%)
 Frame = +3

Query: 609 LIKPDKKEAFRFAKRACELGNMFACANVSLMYKKGDGVEKNQDESXRFFEI 761
           ++K D K AF++ K+A ++GN    + + LMY  G GV+KN +++ ++F++
Sbjct: 575 VVKQDNKTAFKWFKKAADMGNPIGQSGLGLMYMFGKGVDKNYEKAFQYFKM 625


>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
          Length = 926

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 612 IKPDKKEAFRFAKRACELGNMFACANVSLMYKKGDGVEKNQDESXRFFEI 761
           ++ D  ++F F K+A + G   A  NV + Y  G GV+ +   +  +F++
Sbjct: 210 VQEDSCKSFEFHKKAADQGYASAQYNVGVHYFAGRGVQLDMKLAAEYFQL 259


>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
          Length = 534

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 579 NPEKNKNIDYLIKPDKKEAFRFAKRACELGNMFACANVSLMYKKGD 716
           +P   K    +I P  K+ F+ +  AC L   +  AN+  ++KKGD
Sbjct: 353 HPRVLKECALVISPILKQIFQKSLDACNLPREWRIANICPVHKKGD 398


>SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 564 DFNPHNPEKNKNIDYLIKPDKKEAFRFAKRACELGNMFACAN 689
           D NP NPE  +   ++    +   F  + +AC+ G+ F C+N
Sbjct: 438 DANPKNPEFKRKKGWIYSQLRSAQFTLSLQACKDGS-FTCSN 478


>SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 564 DFNPHNPEKNKNIDYLIKPDKKEAFRFAKRACELGNMFACAN 689
           D NP NPE  +   ++    +   F  + +AC+ G+ F C+N
Sbjct: 97  DANPKNPEFKRKKGWIYSQLRSAQFTLSLQACKDGS-FTCSN 137


>SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)
          Length = 594

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = +3

Query: 93  LKKEDEVKDYIENIGIEYRFGCYKEQKPEVCHLLXDYLEAIKKDFEKAAKVYKSNC 260
           L+  +E+ D +  +  + ++   K    EVC +L DY +A ++   +A  +++ +C
Sbjct: 141 LRLREEIGDLLTALTFDLQYDLKKNAICEVCPILNDYDDARQRTV-RAEAIFQKHC 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,095,889
Number of Sequences: 59808
Number of extensions: 448487
Number of successful extensions: 1033
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)