Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C06
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat...    36   0.039
At1g73570.1 68414.m08517 suppressor of lin-12-like protein-relat...    31   0.63 
At1g44030.1 68414.m05079 DC1 domain-containing protein contains ...    29   3.4  
At1g70590.1 68414.m08131 F-box family protein contains Pfam PF00...    28   5.9  
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi...    28   7.8  

>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
           / sel-1 protein-related similar to Sel-1 homolog
           precursor (Suppressor of lin-12-like protein)
           (Sel-1L)(SP:Q9UBV2) {Homo sapiens}
          Length = 678

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = +3

Query: 294 IGNYTLIGRGREKGDPAEALIYFEKGCELNDPGACLHAGMLLTATGPGVNIQRDVPKGYN 473
           IG   + G G +K +  +A  YFEK  +  DP    + G+L      G+ + RDV +   
Sbjct: 321 IGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYL---KGIGVNRDVRQATK 377

Query: 474 CLKKSCDQNDDMACHYLSGMYLTGV 548
               + +     A + L+ M+ TGV
Sbjct: 378 YFFVAANAGQPKAFYQLAKMFHTGV 402


>At1g73570.1 68414.m08517 suppressor of lin-12-like protein-related
           / sel-1 protein-related similar to Sel-1 homolog
           precursor (Suppressor of lin-12-like protein)
           (Sel-1L)(SP:Q9UBV2) {Homo sapiens}
          Length = 604

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 13/161 (8%)
 Frame = +3

Query: 267 YKFGKSCLK-IGNYTLIGRGREKGDPAEALIYFEKGCELNDPGACLHAGMLLTATGPGVN 443
           Y F K+    +G   + G G +K +  +A  YFE      DP    + G+L      G  
Sbjct: 269 YWFSKAEFNGLGYLYVKGYGVDKRNYTKAREYFEMAANNEDPSGHYNLGVLYL---KGTG 325

Query: 444 IQRDVPKGYNCLKKSCDQNDDMACHYLSGMYLTGV--PKN----------VQDFNPHNPE 587
           +++DV         + +     A + L+ M+ TGV   KN          V +  P +  
Sbjct: 326 VKKDVRHATKYFFVAANAGQPKAFYQLAKMFHTGVGLTKNLEMATTFYKLVAERGPWSSL 385

Query: 588 KNKNIDYLIKPDKKEAFRFAKRACELGNMFACANVSLMYKK 710
               ++  +K D  +AF    R  ELG   A +N + +  K
Sbjct: 386 SRWALEAYLKGDVGKAFILYSRMSELGYEVAQSNAAWIVDK 426


>At1g44030.1 68414.m05079 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 597

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 465 GYNCLKKSCDQNDDMAC----HYLSGMYLTGVPKNVQD 566
           GY+C+K  C       C    +   G+YL GVP+ +++
Sbjct: 497 GYSCIKDGCSYAAHSRCATQKNVWDGIYLEGVPEEIEE 534


>At1g70590.1 68414.m08131 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 351

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +3

Query: 609 LIKPDKKEAFRFAKRACELGNMFACANVSLMYKKGDGVEKNQ 734
           +++ +  EA ++  +A E G + A  N+SL Y  G+G+ +N+
Sbjct: 223 VVQTNLLEATKWYLKAAEGGYVRAMYNISLCYSVGEGLPQNR 264


>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 521

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 543 GVPKNVQDFNPHNPEKNKNIDYLIKPDKKEAFRFAKRACELGN 671
           G PK V DF     EK +N DY +K DK+      K+ CE G+
Sbjct: 189 GRPKQVTDFF----EKMEN-DYGLKRDKESLTLVVKKLCEKGH 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,433
Number of Sequences: 28952
Number of extensions: 317878
Number of successful extensions: 744
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)