Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C04
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    44   1e-06
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 33/141 (23%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
 Frame = +2

Query: 227 ITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETGTIENTSLAQYDRLMNTNVRSIY 406
           +  DL+ ++DI K+I+    + G +D+L+NNA I    T++N  +  + ++ + N+  + 
Sbjct: 61  LQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLT 120

Query: 407 YLTMLAVPHLLESKGXXXXXXXXXGIRSFPGVL-------AYNISKASVDQFTRCVALXL 565
            + +  V  L++ KG            S   +L       AY  SK ++   T C+   L
Sbjct: 121 CM-IQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSEL 179

Query: 566 A--PKGVRVNCVNPXVILTEL 622
           A     ++V  ++P ++ T++
Sbjct: 180 AQCESNIKVISISPDLVETDM 200


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 239 LTKESDIEKIIKKTI-DHYGKLD-VLVNNAGIIETGTIENTSL 361
           LT++  +  +    I DH G +  V++ N+G++     E+TSL
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSL 257


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 239 LTKESDIEKIIKKTI-DHYGKLD-VLVNNAGIIETGTIENTSL 361
           LT++  +  +    I DH G +  V++ N+G++     E+TSL
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,681
Number of Sequences: 438
Number of extensions: 3699
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)