Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C02
         (811 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.6  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   2.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   2.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.9  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 513 KNKELVKNIYLDVE-NNEDLKGKKSVY 590
           KN+ L+ NI+L +E N+ +LK  +S Y
Sbjct: 46  KNQLLITNIWLSLEWNDYNLKWNESEY 72


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 513 KNKELVKNIYLDVE-NNEDLKGKKSVY 590
           KN+ L+ NI+L +E N+ +LK  +S Y
Sbjct: 46  KNQLLITNIWLSLEWNDYNLKWNESEY 72


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 149 QVFQSYIFTNLMRVKRFYNYFKL 81
           Q + SYIF N+M ++ FY  F +
Sbjct: 129 QSYMSYIFANIMGLE-FYKQFAI 150


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 149 QVFQSYIFTNLMRVKRFYNYFKL 81
           Q + SYIF N+M ++ FY  F +
Sbjct: 129 QSYMSYIFANIMGLE-FYKQFAI 150


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 414 KFPHESVKITLQDESIKNKV 473
           KFP+ S+K  + DE  KN+V
Sbjct: 87  KFPYRSIKFNIPDE--KNEV 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,127
Number of Sequences: 336
Number of extensions: 3381
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)