Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C02
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    31   0.19 
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    31   0.19 
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    27   3.2  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    27   3.2  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   5.5  
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S...    26   5.5  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   7.3  

>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 519 KELVKNIYLDVENNEDLKGKKSVYMITDVLMAKTIEFRVTIGSSSRIFHLGNASPLVFG 695
           +EL+ N Y      +  KG     +    ++   I F  T G+   I +LG  +PL+FG
Sbjct: 276 RELIGNNYYFYYATQVFKGTGMTDIFLPAVILGAINFGTTFGALYTIDNLGRRNPLIFG 334


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 519 KELVKNIYLDVENNEDLKGKKSVYMITDVLMAKTIEFRVTIGSSSRIFHLGNASPLVFG 695
           +EL+ N Y      +  KG     +    ++   I F  T G+   I +LG  +PL+FG
Sbjct: 276 RELIGNNYYFYYATQVFKGTGMTDIFLPAVILGAINFGTTFGALYTIDNLGRRNPLIFG 334


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 528 VKNIYLDVENNEDLKGKKSVYMITDVLMAKTIEFRVTIGSSSRIFHLGN 674
           V N+Y ++ + +  K KKS+   T + + K +E+   +G  ++I + GN
Sbjct: 130 VMNMYHNIRHLDPEKTKKSILPCTPLAIVKILEY---LGVYNKIINYGN 175


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 366 DYVKWLEDGDFQDIDFKFPHESVKITLQDESIKNKV 473
           D++ W  D    D D  FP    +I   +E + NK+
Sbjct: 125 DFILWTGDNSRHDNDNHFPRTQSEILASNEDLVNKM 160


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 673 LPRWKILEDEPIVTRNSMVFAIS 605
           +PRW  L ++P V+ N + FA++
Sbjct: 318 MPRWYSLSNDPKVSNNVLEFAVT 340


>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
           Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 108 YSHEIRKDVRLENLKSLKLEDAWPFIRDEIEI 203
           +S  +RK VRL N KS++    W +I +++ +
Sbjct: 42  FSMHLRKHVRLPNYKSVQCRSPW-WIAEQVAV 72


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 621 IEFRVTIGSSS--RIFHLGNASPLVFGLEEYLIGDDGQLIAKEPVTIQSKLLHWQKVDPS 794
           +E RV +  +   +I H+    P++    + L+  + Q++ K+P  I+  +L     D  
Sbjct: 95  LEARVNLTKAEVIQIEHITGVCPILTA--DMLVNTE-QIVRKDPAVIEQCILSGVPPDQM 151

Query: 795 DHLY 806
           DH+Y
Sbjct: 152 DHVY 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,692
Number of Sequences: 5004
Number of extensions: 60963
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)