Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C02
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    29   3.9  
AC199172-5|ABO33273.1|  305|Caenorhabditis elegans F-box a prote...    28   6.9  
Z81496-6|CAB04070.2|  313|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    28   9.1  
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    28   9.1  

>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 152  LQVFQSYIFTNLMRVK-RFYNYFKLLRHFS**ILRKINR 39
            L+ +++Y F++  R K R +NYF L  H +   L K+N+
Sbjct: 1008 LEKWKNYEFSDFFRAKCRIFNYFLLFSHKTSKFLEKLNQ 1046


>AC199172-5|ABO33273.1|  305|Caenorhabditis elegans F-box a protein
           protein 30 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 378 WLEDGDFQDIDFKFPHESVKITLQDESIKNKVRVIMVNFSRCTIPKNKELVKNIYLD 548
           W+   D   I++ F  E   I + + S+++ ++V      RCT  K    V N+ LD
Sbjct: 199 WISPFDCPPIEYFFHFEDFTINIYNISMQSVIKVRDDLLQRCTFQKCIFFVLNLNLD 255


>Z81496-6|CAB04070.2|  313|Caenorhabditis elegans Hypothetical
           protein F09C6.2 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 396 FQDIDFKFPHESVKITLQDESIKNKVRVIMVNFSRCTI 509
           F  IDF F  E V I LQD+  K ++++   +F++ ++
Sbjct: 59  FDSIDFHFQDEHVTIVLQDDG-KRELQINAEHFTKSSL 95


>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = -2

Query: 168 LQVSVTSSFPILHLYES 118
           +++S+T+S+P++HLY S
Sbjct: 256 IELSITTSYPVIHLYAS 272


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = -2

Query: 168 LQVSVTSSFPILHLYES 118
           +++S+T+S+P++HLY S
Sbjct: 256 IELSITTSYPVIHLYAS 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,986,417
Number of Sequences: 27780
Number of extensions: 329099
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)