Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C02
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 567 DLHYFQHPNKYF*QVPYS*ESYIW 496
           D  YF  PN+   +VP S  +Y W
Sbjct: 241 DPDYFDIPNELVLEVPLSHPTYDW 264


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 686 KRRCITEMEDSRRRANCHS 630
           K   I ++ED R + +CHS
Sbjct: 480 KSSSINKLEDLRNKKSCHS 498


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 686 KRRCITEMEDSRRRANCHS 630
           K   I ++ED R + +CHS
Sbjct: 480 KSSSINKLEDLRNKKSCHS 498


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 686 KRRCITEMEDSRRRANCHS 630
           K   I ++ED R + +CHS
Sbjct: 480 KSSSINKLEDLRNKKSCHS 498


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 653 RRRANCHSELYGLRHKHISDHIN 585
           +R ++CHS    LRH+  + + N
Sbjct: 225 QRTSSCHSRYEDLRHEDRNSYRN 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,065
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)