Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C02
         (811 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00...    29   2.8  
At3g20150.1 68416.m02554 kinesin motor family protein contains P...    29   3.7  
At3g26410.1 68416.m03293 expressed protein                             29   4.8  
At5g05100.1 68418.m00541 expressed protein                             28   6.4  
At2g22590.1 68415.m02678 glycosyltransferase family protein cont...    28   8.4  

>At5g49610.1 68418.m06139 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (gb|AAF30317.1)
          Length = 359

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 138 LENLKSLKLEDAWPFIRDEIEIEIGSRQLVCIPHITEADLYKV 266
           ++NL+ +  E +  F+RD + I + S  L+C   I E  +Y V
Sbjct: 72  VDNLRGVS-ELSLDFVRDRVRIRVSSNGLLCCSSIPEKGVYYV 113


>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1114

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 105 LYSHEIRKDVRLENLKSLKLEDAWPFIRDEIEIEIGSRQ 221
           L S    KD+  E L+  ++E  W  + DE  +EI +++
Sbjct: 877 LRSKNAEKDIEEERLRCTEMESEWISLTDEFRVEIETQR 915


>At3g26410.1 68416.m03293 expressed protein
          Length = 477

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 363 EDYVKWLEDGDFQDIDFKFPHESVKITLQDESIKN 467
           E+++KWLEDG+     FK P +S +I    ++ K+
Sbjct: 434 ENHLKWLEDGNIHSSIFK-PIDSSQIDTDSKAFKD 467


>At5g05100.1 68418.m00541 expressed protein
          Length = 324

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 594 SYKRTSSPSDLHYFQHPN 541
           +Y +T + SD+H+F+HPN
Sbjct: 306 TYAQTLNASDVHHFRHPN 323


>At2g22590.1 68415.m02678 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 470

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/66 (19%), Positives = 31/66 (46%)
 Frame = +3

Query: 405 IDFKFPHESVKITLQDESIKNKVRVIMVNFSRCTIPKNKELVKNIYLDVENNEDLKGKKS 584
           I +  P +  +     ES+ N +R++MV        +N + +K ++ D++  +       
Sbjct: 404 IGYMIPRDETEGFFTKESVANSLRLVMVEEEGKVYRENVKEMKGVFGDMDRQDRYVDSFL 463

Query: 585 VYMITD 602
            Y++T+
Sbjct: 464 EYLVTN 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,041,156
Number of Sequences: 28952
Number of extensions: 307657
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)