Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_C01
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    30   0.41 
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    28   1.3  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    27   3.9  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   5.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   6.7  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    25   8.9  

>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 326 DFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNE 430
           D II+GAG  GC L   L   Q  K+L++E   +E
Sbjct: 7   DIIIIGAGITGCALGAALGR-QGRKVLVLERDMSE 40


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 320 EYDFIIVGAGTAGCVLANRLSEIQDWKILLVE 415
           EYD I++G G   CVL+  LS +   K+L ++
Sbjct: 4   EYDVIVLGTGLTECVLSGLLS-VDGKKVLHID 34


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 323 YDFIIVGAGTAGCVLANRLSEIQDWKILLVEA-GTNENYLMDIPIVANYLQFTAANWGYK 499
           +D++++G G+ G   A R ++    K+ L+EA G      ++   V   + +  A+   K
Sbjct: 8   FDYLVIGGGSGGLASARRAAK-HGAKVALIEASGRLGGTCVNYGCVPKKIMWNIADLVAK 66

Query: 500 TKPSNKYCAGFENKQ 544
            K + +   GF N Q
Sbjct: 67  MKTAKQ--NGFPNSQ 79


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = -3

Query: 617 MNPWCISCN*VHLNLQL----LCLWASYIVC 537
           +N W IS   + L L      +C+W  Y++C
Sbjct: 72  INTWMISATAIELGLNWWEAWICVWVGYLIC 102


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 239 INSLLNFVTEGTKQLDSEPPDQRNLLSEYDFIIVGAGTAGCVLANRLSEIQDWKI-LLVE 415
           I+  +  + +G K+ DS+ PD  N+    D+++ G G +G    + + E    +I   V 
Sbjct: 208 ISRPIRHLLKGEKK-DSDIPDLHNVRDISDYVLHGDGISGAASDSEIEEDATVEIDRPVP 266

Query: 416 AGTNENYL 439
             T EN L
Sbjct: 267 TKTEENLL 274


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 5/20 (25%), Positives = 17/20 (85%)
 Frame = +1

Query: 556 QRQSSWRFKCTQLHDIHQGF 615
           ++ ++W+++C ++ ++H+GF
Sbjct: 209 EKFTTWQYRCPEMINVHKGF 228


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 314 LSEYDFIIVGAGTAGCVLANRL 379
           L+E   +I GAGTAG  +AN++
Sbjct: 295 LTEQRIMIFGAGTAGVGIANQI 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,947
Number of Sequences: 5004
Number of extensions: 69073
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)