Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C01
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 50 2e-06
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 50 3e-06
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 49 4e-06
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 48 1e-05
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 47 2e-05
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 45 8e-05
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 43 3e-04
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 29 4.0
03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824 29 5.3
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241... 28 7.1
10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904... 28 9.3
09_03_0076 - 12120900-12121183,12123083-12123188 28 9.3
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 50.0 bits (114), Expect = 2e-06
Identities = 38/101 (37%), Positives = 52/101 (51%)
Frame = +2
Query: 314 LSEYDFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNENYLMDIPIVANYLQFTAANWG 493
+S YD+IIVG GTAGC LA LS Q +++LL+E G + D + N +F A+
Sbjct: 46 VSYYDYIIVGGGTAGCPLAATLS--QRFRVLLLERGGSP---YDDERIGNMTRF--ADTL 98
Query: 494 YKTKPSNKYCAGFENKQCNWPRGKVVGGSSVLNYMIYTRGS 616
T PS+ R +V+GG S +N YTR S
Sbjct: 99 SDTSPSSPAQRFVSEDGVINSRPRVLGGGSCINAGFYTRAS 139
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 49.6 bits (113), Expect = 3e-06
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Frame = +2
Query: 311 LLSEYDFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNENYLMDIPIVANYLQFTAANW 490
L+S Y++I++G GTAGC LA LSE ++LL+E G + +++ FT A
Sbjct: 50 LVSSYNYIVIGGGTAGCPLAATLSEHS--RVLLLERGG-----LPYANMSSEQHFTDALA 102
Query: 491 GYK-TKPSNKYCAGFENKQCNWPRGKVVGGSSVLNYMIYTRGSS--VDYNNWKA-MGNDG 658
P+ ++ + E+ N R +V+GG S LN YTR S+ V + W A + N
Sbjct: 103 DTSPASPAQRFIS--EDGVVN-ARARVLGGGSCLNAGFYTRASNEYVRASGWDARLVNSS 159
Query: 659 WGW 667
+ W
Sbjct: 160 YRW 162
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 49.2 bits (112), Expect = 4e-06
Identities = 34/100 (34%), Positives = 56/100 (56%)
Frame = +2
Query: 311 LLSEYDFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNENYLMDIPIVANYLQFTAANW 490
+++ YD+II+G GTAGC LA LSE +++LL+E G + + +A++ A
Sbjct: 39 VMAYYDYIIIGGGTAGCPLAATLSE--RYRVLLLERGGSPYDDARVLNMAHFADVLADTS 96
Query: 491 GYKTKPSNKYCAGFENKQCNWPRGKVVGGSSVLNYMIYTR 610
G PS ++ + E+ N R +V+GG S +N +TR
Sbjct: 97 G--ASPSQRFVS--EDGVIN-ARPRVLGGGSCINAGFFTR 131
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 47.6 bits (108), Expect = 1e-05
Identities = 36/103 (34%), Positives = 54/103 (52%)
Frame = +2
Query: 311 LLSEYDFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNENYLMDIPIVANYLQFTAANW 490
L+S Y++I+VG GTAGC LA LSE ++LL+E G ++ ++ A
Sbjct: 53 LVSYYNYIVVGGGTAGCPLAATLSERS--RVLLLERGGLPYGNRNVSSEYHFADALADT- 109
Query: 491 GYKTKPSNKYCAGFENKQCNWPRGKVVGGSSVLNYMIYTRGSS 619
P+ ++ + E+ N R +V+GG S LN YTR SS
Sbjct: 110 -SPRSPAQRFVS--EDGVVN-ARARVLGGGSCLNAGFYTRASS 148
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 46.8 bits (106), Expect = 2e-05
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Frame = +2
Query: 272 TKQLDSEPPDQRNLLSEYDFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNENYLMDIP 451
T Q S P R+ YD+I+VG GTAGC LA LS +K+LL+E G + ++
Sbjct: 36 TLQKASSFPAMRH--ETYDYIVVGGGTAGCPLAATLS--LKYKVLLLERGGSPYGNRNVS 91
Query: 452 IVANYLQFTAANWGYKTKPSNKYCAGFENKQCNWPRGKVVGGSSVLNYMIYTRGSS--VD 625
+ N+ +N P + A R +V+GG + +N Y+R SS +
Sbjct: 92 YMENF-HIGLSNMA----PDSASQAFISTDGVINARARVLGGGTCINAGFYSRASSNFIQ 146
Query: 626 YNNW-KAMGNDGWGW-DDVLPYFKKI 697
W + + N+ + W +D + + KI
Sbjct: 147 EVGWDEDLVNESFPWVEDKIVQWPKI 172
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 44.8 bits (101), Expect = 8e-05
Identities = 35/96 (36%), Positives = 51/96 (53%)
Frame = +2
Query: 323 YDFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNENYLMDIPIVANYLQFTAANWGYKT 502
YD+IIVG GTAGC LA LS Q +K+LL+E G + +I + N+ A +
Sbjct: 50 YDYIIVGGGTAGCPLAATLS--QKYKVLLLERGGSPYGNRNISHLENFHICLADD--SPN 105
Query: 503 KPSNKYCAGFENKQCNWPRGKVVGGSSVLNYMIYTR 610
PS + + + N R KV+GG + +N Y+R
Sbjct: 106 SPSQGFIS--TDGVIN-ARAKVLGGGTSVNAGFYSR 138
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/116 (25%), Positives = 52/116 (44%)
Frame = +2
Query: 323 YDFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNENYLMDIPIVANYLQFTAANWGYKT 502
YD+I+VG GTAGC LA L+ ++L++E G + +++ A
Sbjct: 55 YDYIVVGGGTAGCPLAATLAGPGGGRVLVLERGGAPAEFPPLATAGGFVRTLAMADPAPE 114
Query: 503 KPSNKYCAGFENKQCNWPRGKVVGGSSVLNYMIYTRGSSVDYNNWKAMGNDGWGWD 670
+ E+ N R +V+GG++ +N Y+R + D+ G + WD
Sbjct: 115 SDAPAQTFASEDGVPN-VRARVLGGATSINAGFYSR-AHPDWFRSHGEGGEAMNWD 168
>07_03_0562 + 19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = -2
Query: 411 TSKIFQSWISLSRLASTHPAVPAPTMMKSYSDSKFXXXXXXXXSCLVPSVTKFSNELIGL 232
++ + QSWIS + + P + +PT S S K + +V +F + + +
Sbjct: 883 SAPVAQSWISFGASSESKPTIVSPTFHDSNSGWKMPFANARPDEAKMTAVPQFFRQPVQM 942
Query: 231 ANWVPIPGSNKNSI 190
PG NK +
Sbjct: 943 VR--ESPGQNKGLV 954
>03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824
Length = 206
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +2
Query: 152 SRYCVPRAAAVLWMLFLLLPGIGTQFANPINSLLNFVTEGTKQLDSEPPDQRNLLSEYDF 331
SR +PR A F L P + Q SL + +Q EPPDQ +Y F
Sbjct: 18 SRAALPRVGAG----FALPPAVSCQPRRRRLSLRAVAVDSDQQGSPEPPDQEAKPKKYHF 73
Query: 332 IIVGA 346
++ A
Sbjct: 74 LVANA 78
>07_03_0375 +
17408815-17409035,17422820-17423477,17423780-17424161,
17424236-17424550,17424727-17425118,17432479-17432508
Length = 665
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +2
Query: 542 QCNWPRGKVVGGSSVLNYMIYTRGSSVDYNNWKAMGNDGWGWDDVLPYFKKIENYNIPSF 721
+C K +GG +++ ++ G YN W + G G + ++E+ NIP F
Sbjct: 61 RCKRGAVKEMGGGMTIHFHLFELGFMPSYNCWTSHGEQGVEMQE-----DEVEDDNIPDF 115
>10_08_0628 +
19389508-19389637,19389774-19389850,19390332-19390438,
19390545-19390626,19390702-19390814,19391023-19391086,
19391192-19391266,19391691-19391807,19392131-19392199,
19392319-19392411,19392733-19392835,19393040-19393164,
19393317-19393366,19393477-19393543,19393663-19393742,
19394038-19394166,19394274-19394340,19394429-19394512
Length = 543
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 323 YDFIIVGAGTAGCVLANRLSEI 388
YD ++VGAG AG A RL ++
Sbjct: 3 YDVVVVGAGPAGLAAAIRLKQL 24
>09_03_0076 - 12120900-12121183,12123083-12123188
Length = 129
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 332 IIVGAGTAGCVLANRLSEIQDWKILLVEAGTNENYLMDIPIVANYLQFTAANW 490
II+GAG +G RLSE IL++EA + M A ANW
Sbjct: 28 IIIGAGISGISAGKRLSEAGITDILILEATDHIGGRMHKQRFAGVNVEIGANW 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,753,261
Number of Sequences: 37544
Number of extensions: 444031
Number of successful extensions: 1110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -