Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_C01
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 6e-26
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9) 31 1.4
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 29 5.5
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 29 5.5
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 29 5.5
SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41) 28 7.2
SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0) 28 9.5
>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 114 bits (275), Expect = 6e-26
Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Frame = +2
Query: 317 SEYDFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNEN-YLMDIPIVANY-LQFTAANW 490
SE+D++I GAG+AGCVLANRLS D K+LL+EAG + + + +P Y L NW
Sbjct: 162 SEHDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNW 221
Query: 491 GYKTKPSNKYCAGFENKQCNWPRGKVVGGSSVLNYMIYTRGSSVDYNNWKAMGNDGWGWD 670
Y T P N+ PRG+V GGSS LN M+Y RG + DY+ W+ G GW +
Sbjct: 222 YYHTAPQKH----MNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRWEREGAQGWSYA 277
Query: 671 DVLPYFKKIENYNI 712
D LPYF+K + + +
Sbjct: 278 DCLPYFRKSQTHEL 291
>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +2
Query: 314 LSEYDFIIVGAGTAGCVLANRLSEIQDWKILLVEAGTNENYLMDIPIVANY 466
L +YDFII G GTAGC+LANRL+ ++L++EAG +E M I I A +
Sbjct: 8 LGDYDFIIAGGGTAGCILANRLTADGRHRVLMLEAG-HEARSMWISIPAGF 57
>SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9)
Length = 350
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -3
Query: 668 PNPSHRFPSPSNCYSLLMNPWCISCN*VHLNLQLLCLWASYIVCFQNQHNIY*MVSFCSP 489
PNP + +P+P CY NP + N + N + + C+ N + Y +C+P
Sbjct: 171 PNPDYCYPNPDFCYP---NPDYCNPNPDYCNPNPDSCYPNPDSCYPNPDSCYPNPDYCNP 227
Query: 488 N 486
N
Sbjct: 228 N 228
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 317 SEYDFIIVGAGTAGCVLANRLS 382
+EYD++++G G CVL+ LS
Sbjct: 3 AEYDYVVLGTGLKECVLSGLLS 24
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 760 IQIPVVPVVLWVIKGRYVVILYFLKIREYVVPTPAIVSHRLPIVIV 623
+ +PVV VV V V++ F+ + VV P +V +PIV+V
Sbjct: 1305 VVVPVVVVVSIVFVSVPAVVVVFVPVVVVVVVAPVVVVVVVPIVVV 1350
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 760 IQIPVVPVVLWVIKGRYVVILYFLKIREYVVPTPAIVSHRLPIVIV 623
+ +PVV VV V V++ F+ + VV P +V +PIV+V
Sbjct: 320 VVVPVVVVVSIVFVSVPAVVVVFVPVVVVVVVAPVVVVVVVPIVVV 365
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 218 LFQA-AIRTASTAPPLPSAHSSDSFS*FRCV 129
L+QA A+RT T P SAH +DS +CV
Sbjct: 401 LYQAQAVRTVQTLPSTDSAHRTDSTQHRQCV 431
>SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41)
Length = 264
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 317 SEYDFIIVGAGTAGCVLANRLSEIQ-DWKILLVEAG 421
S+YD IIVG G AG A ++E KI ++E G
Sbjct: 3 SKYDIIIVGGGAAGFFTAINIAERNPKRKIAILERG 38
>SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 326 DFIIVGAGTAGCVLANRLSEIQ-DWKILLVEA 418
D ++VGAGT+G A + + Q D K++++EA
Sbjct: 258 DVVVVGAGTSGLCSAYEILKAQKDCKVVVLEA 289
>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
Length = 394
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Frame = +2
Query: 254 NFVTEGTKQLDSEPPDQRNLL-------SEYDFIIVGAGTAGCVLANRLSE 385
+F+T G + + +P R L YD++++G G+ G A R +E
Sbjct: 21 DFLTSGVEIVPCDPSQMRISLRLMMAAVKAYDYVVIGGGSGGIASARRAAE 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,590,583
Number of Sequences: 59808
Number of extensions: 510443
Number of successful extensions: 1123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -