Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_B24
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10) 41 0.001
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 31 1.4
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 30 2.4
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012) 29 5.5
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023) 28 7.2
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 28 9.5
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
Length = 282
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +1
Query: 79 EFFYGVTLSSSHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKPDELNVIQVEAMS 246
E F+G LS S + TW+PE E +KLV+ QA LG +K ++++V +M
Sbjct: 7 EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSMD 64
Query: 247 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQG 360
+ + + L+ G + L++ F PVTF L G
Sbjct: 65 FKGDDSTHTIVSLREGATEMCALNLAF-SPPVTFKLASG 102
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 470 ILSSRMMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQ 637
+L + R KEK++ K +K RAKK K R++ + KLH R ++
Sbjct: 942 LLIEKEKREKEKQKERLREKEEKEKQKEAERAKKEKERLLQEDKLHEKEEKDRKDK 997
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 464 EMILSSRMMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAK 601
E IL R +E+E+ + + +R +++ K NP A+ + +I+P K
Sbjct: 722 EAILRQREEEREEEERRNIAMLRQQMVHKANPIARFKGVQILPSEK 767
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 350 RVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTC 228
RVN+T +G + RTC +P S ++ SD + TC
Sbjct: 821 RVNITKCNGTNAQSRTCAFAPCPVNGAWSSWSAWSDCSKTC 861
>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
Length = 1148
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 494 IKEKE-QGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAWRP 652
+K+ E Q A+ +R++++++ N + + +M A + PR+ ++ T WRP
Sbjct: 822 VKDMERQVMANNIRIQLLEEQNDKLRSSITLLM-NASANAPRKTAQDPMTLWRP 874
>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 494 IKEKE-QGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAWRP 652
+K+ E Q A+ +R++++++ N + + +M A + PR+ ++ T WRP
Sbjct: 17 VKDMERQVMANNIRIQLLEEQNDKLRSSITLLM-NASANAPRKTAQDPMTLWRP 69
>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
Length = 873
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 163 NKLVIRQALLGPDAKPDELNVIQVEAMSLQ 252
NKLV+ Q LLG AK + + +++ E L+
Sbjct: 304 NKLVLEQQLLGLSAKEERIEILEEENKKLK 333
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 83 FSMVSPFHHHISQRHGIQRQKQNTHAATSSSFVK 184
FS+ P I+ RHG+ RQK HA+ SF K
Sbjct: 338 FSLHRPVED-INYRHGLGRQKLLFHASRGKSFYK 370
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 485 MMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRR 619
M I+EKE+ + + K K+ R +KR C+++ K K + RR
Sbjct: 921 MKEIEEKEKKEEAERKAKEEKEREERERKRICQLL-KEKAEQERR 964
>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 616 SWAMQLCLWHYSTFSLFCPWVHLLHYLHPHSACASLLLF 500
SW M + +WH F+ LH L+ H C S L F
Sbjct: 579 SWDMTIMVWHIVKFT-------RLHVLYGHKGCVSCLRF 610
>SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 308 RTCLDSPTFNTATGSFTASCSDMASTC 228
R C D T+ TGS C D++STC
Sbjct: 284 RYCYDDMTWQPITGSPRRFCLDVSSTC 310
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,848,778
Number of Sequences: 59808
Number of extensions: 415858
Number of successful extensions: 1030
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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