Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B24
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14850.1 68415.m01687 expressed protein                             31   1.1  
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    29   4.5  
At3g58050.1 68416.m06471 expressed protein                             28   6.0  
At4g33890.2 68417.m04809 expressed protein                             28   7.9  
At4g33890.1 68417.m04808 expressed protein                             28   7.9  
At3g14000.2 68416.m01768 expressed protein                             28   7.9  
At3g14000.1 68416.m01767 expressed protein                             28   7.9  

>At2g14850.1 68415.m01687 expressed protein
          Length = 291

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 157 RSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVLKVGESRHV 306
           RS K   R + LGP  KP  L     E+MS  +A +LP+ V+ V +   V
Sbjct: 104 RSRKFRDRPSPLGPLGKPQSLTTTNDESMS--KAQRLPMEVVSVEDGEEV 151


>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = -3

Query: 308 RTCLDSPTFNTATGSFTASCSDMASTCIT----FNSSGLASGPNNA*RMTSLLLRGYSAF 141
           + CL  P+ N+A  S   S + +++   +     N  GL +  + +  M  +++R  S  
Sbjct: 110 KRCLSLPSSNSAKLSLVVSTTPVSAVVHSEQPKSNKDGLHASVSRSLSMNRVIVRAVSFD 169

Query: 140 ASGSHVSD*CDDERVTP 90
            + +H+S+  + +++TP
Sbjct: 170 DNKNHISNEANGDQITP 186


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 97  TLSSSHQSETWDPEAKAEYPRSN 165
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At4g33890.2 68417.m04809 expressed protein
          Length = 342

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +1

Query: 157 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKL-------PVAVLKVGESRHV 306
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


>At4g33890.1 68417.m04808 expressed protein
          Length = 342

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +1

Query: 157 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKL-------PVAVLKVGESRHV 306
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


>At3g14000.2 68416.m01768 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 722 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 594
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


>At3g14000.1 68416.m01767 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 722 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 594
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,015
Number of Sequences: 28952
Number of extensions: 286036
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)