Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B23
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)              135   3e-32
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   6e-09
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       32   0.41 
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)                   31   0.72 
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_6983| Best HMM Match : rve (HMM E-Value=0.011)                      29   3.9  
SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28)                       28   6.7  
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      28   6.7  
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)                 28   8.9  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score =  135 bits (327), Expect = 3e-32
 Identities = 58/118 (49%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
 Frame = +3

Query: 327 ECVPENLDLKKKVFQNLDSVVDDN-TIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPY 503
           EC PENL+LKKKVFQNL++ +  +  I              E L+ + + IV+HP+NPPY
Sbjct: 1   ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60

Query: 504 YVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 677
           YVPLVE++PAPWT   V ++T ++M++IGQ PV L +E +GF++NR+QYA++ E WRL
Sbjct: 61  YVPLVEVIPAPWTDASVIEQTIKLMKDIGQSPVLLKKETNGFIVNRLQYALIAEAWRL 118


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
 Frame = +3

Query: 75  IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGELKA 254
           + ++G+GL+G   A   A  G +V +YD  A+    A+E  K  L   + + L R E+ A
Sbjct: 8   VAVIGAGLMGTCIAGELAYHGARVNLYDRSAQ----AMEKSKEML-IQQKEQLKREEVMA 62

Query: 255 SEQF-QCIKGSTDLATAVKGAVFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXX 431
           +  F   +     L  AV  +  + E   ENL++KK VF+++      N +         
Sbjct: 63  TSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAVIATNTLALD 122

Query: 432 XXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIME 581
                E + +  + +    + P Y +P VEI     T PE  +K ++ +E
Sbjct: 123 TSVVAEHVTNPERCLGIRFLYPVYSIPEVEITLGSQTSPETIQKVQQFLE 172


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           ++ IVG GL+G   A+ FA  GY+V +Y+
Sbjct: 165 EVAIVGGGLVGALSAVFFAKRGYKVDLYE 193


>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
          Length = 456

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +3

Query: 48  MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTV 152
           ++S F  +++ ++G+G+IG + A    + GY+VTV
Sbjct: 13  LSSPFGGQRVLVIGAGVIGLTTAYELLTAGYEVTV 47


>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           K+GIVGSG+ G S A L    G +V +Y+
Sbjct: 2   KVGIVGSGIAGLSAAWLLTLRGNEVHLYE 30


>SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = -1

Query: 296 CQIRRPFYTLKLFASFELAS*QTIVFKGMQLVFDVLNGIGNLFCDYIIYSNL 141
           C  R P       A+ E A    I+ KG   VFD L   GN+     IY NL
Sbjct: 30  CSTRIPHPGKDKLATHEGARHMLIMHKGKFFVFDTLTTDGNIVSTSTIYENL 81


>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 251

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 450 GLKHKSQVIVSHPVNPPYYVPLVE-IVPAPWTKPEVAKKTREIMEEIGQQPVS 605
           G+ +    +V  P  P    P+   +VP+P T+PEV   T   +E+   Q  S
Sbjct: 193 GMPNSPPQVVDIPETPAVVPPIPTLVVPSPLTQPEVESPTPSCIEQQPSQQYS 245


>SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28)
          Length = 403

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 240 GELKASEQFQCIKGSTDLATAVKGAVFVQECV 335
           G LK S + QC++ S  +  +V G VFV   V
Sbjct: 125 GALKQSVEIQCVRHSPTVFPSVDGEVFVSHIV 156


>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 99  IGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206
           +GR W +   ++ +QV   D V KQ   A++D  Y+
Sbjct: 1   MGRLWILAIPAIIWQVCTTDAVRKQQLRAVDDETYK 36


>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
          Length = 765

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 174 ITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLATAVKGAVFVQECVPENLD- 350
           +  AIE  +      EN  L+ GE+  S+  +     T L   VK  +     V E+L  
Sbjct: 105 LAQAIERCRMNEMRKENRDLVLGEINKSDSMRICVDLTQLNEGVKWEIQPMPSVDESLSK 164

Query: 351 -LKKKVFQNLDS 383
             + KVF  LD+
Sbjct: 165 LSQGKVFSKLDA 176


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 534  PWTKPEVAKKTREIMEEIGQQPVSLTREID 623
            PW      +  R++ + IG+ P +L REID
Sbjct: 1831 PWLSSAEERLARKMAQPIGRDPSTLRREID 1860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,275,147
Number of Sequences: 59808
Number of extensions: 459421
Number of successful extensions: 1211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)