Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B22
         (543 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7HJD5 Cluster: Putative uncharacterized protein; n=1; ...    32   9.8  
UniRef50_Q74BJ6 Cluster: Valyl-tRNA synthetase; n=30; Bacteria|R...    32   9.8  

>UniRef50_A7HJD5 Cluster: Putative uncharacterized protein; n=1;
           Fervidobacterium nodosum Rt17-B1|Rep: Putative
           uncharacterized protein - Fervidobacterium nodosum
           Rt17-B1
          Length = 167

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 359 LILFFCLALEILNLHGKVFFFFSDIKINYEV 451
           LI  F L++ + NL  + FF  SD+KIN+E+
Sbjct: 17  LIAMFLLSISLFNLK-RAFFVVSDLKINFEI 46


>UniRef50_Q74BJ6 Cluster: Valyl-tRNA synthetase; n=30; Bacteria|Rep:
           Valyl-tRNA synthetase - Geobacter sulfurreducens
          Length = 887

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 395 SGFQAPGRKIKSVANHTFLYWNQINKIYHINIFGFMNLDVF 273
           + F A GR IK        Y N +NKI++ + F  MNL+ F
Sbjct: 555 AAFAAQGRDIKLAEERIAGYRNFVNKIWNASRFALMNLEGF 595


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,429,699
Number of Sequences: 1657284
Number of extensions: 5081947
Number of successful extensions: 14516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14513
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)