Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B22
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    26   3.1  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   5.5  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   7.2  

>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
 Frame = -2

Query: 449 LHNLFLYPXXXXKLYH--------ASSGFQAPGRKIKSVANHTFLYWNQINKIYHINIFG 294
           LH+ ++YP     L+H        AS  F++    ++S+  H F ++  ++K+ ++ +F 
Sbjct: 140 LHHRYVYPRLHK-LHHKWIICTPYASHAFKSADGFLQSLPYHLFPFFFPLHKLTYLALFT 198

Query: 293 FMN 285
           F+N
Sbjct: 199 FVN 201


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 424 KKKKNFTMQVQDFKRQAEK*NQSRII 347
           K +KN T++V+  K++  K NQ+R++
Sbjct: 257 KPEKNLTVRVETKKQRNRKTNQTRLV 282


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 392 GFQAPGRKIKSVANHTFLYWNQINKIYHINIFGFMNLDVFLFN 264
           G  A G   ++    T  YW   N +  + I+   +L V +FN
Sbjct: 181 GDSAAGGTQQNFVRQTTKYWVHPNNVTELKIYILKHLPVLVFN 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,616
Number of Sequences: 5004
Number of extensions: 21951
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)