Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B22
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499...    29   3.2  
07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609...    27   7.3  

>10_02_0078 -
           4992019-4992594,4993156-4993248,4995984-4996202,
           4996282-4996345,4996429-4996485,4996573-4996671,
           4997296-4997327
          Length = 379

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 226 RSMQPENMQSTQSTPGVRCTQQRPEQYMQQLSGDV*LTSRGLADAKARRA 77
           +  Q +  Q  QS P  +  Q  P+Q  QQ+  +   T R  A A AR A
Sbjct: 195 KQQQAQPQQPKQSLPQQQQKQSLPQQQQQQMPHEKPTTLRRAASAAARTA 244


>07_01_0785 +
           6095041-6095135,6095455-6095760,6098458-6098554,
           6098943-6098999,6099202-6099751,6099922-6100234,
           6100245-6100335,6101002-6101469
          Length = 658

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 268 LIKCNKNMVMRMSMRSMQPENMQSTQSTPGVRCTQQRPEQYMQQL 134
           LI+  + + M      M+P   Q + S P   CT Q P Q   QL
Sbjct: 192 LIQYARGIFMDQHGIHMKPTLSQHSTSNPVTHCTHQHPIQVQMQL 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,591,611
Number of Sequences: 37544
Number of extensions: 125579
Number of successful extensions: 289
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)