Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B22
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8)           30   1.1  
SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)                28   5.7  
SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1)             27   7.5  

>SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8)
          Length = 306

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 15  PSVTLRRTKQTIKMFKYLIFVALLAFASAKPLLVSYTSPDSCCIYCSGRCCVHRTPGVLC 194
           P V +     T+ +   ++FV L A+   K    S +SP S  I C    C+H +  VLC
Sbjct: 23  PQVKILAALSTLFLVIAIVFVGLFAYEKLKSAETSKSSPLSDKI-CFQPSCIHVSSVVLC 81


>SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)
          Length = 371

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 60  KYLIFVALLAFASAKPLLVSYTSPDSCC 143
           KYLIF   L+FAS K +L  Y +  + C
Sbjct: 177 KYLIFPYFLSFASGKKILQRYAAEFNNC 204


>SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1)
          Length = 886

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 398 SSGFQAPGRKIKSVANHTFLYWNQIN 321
           SSG+ + G + K V N   L+WN  N
Sbjct: 743 SSGYASDGYRRKKVMNRNSLFWNNEN 768


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,240,169
Number of Sequences: 59808
Number of extensions: 155985
Number of successful extensions: 388
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)