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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B21
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    67   3e-12
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    36   0.008
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    33   0.056
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    31   0.23 
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    31   0.23 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    28   1.2  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    28   1.6  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.1  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   2.8  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   3.7  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    27   3.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    27   3.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    26   4.9  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   4.9  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    26   6.5  
SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    25   8.6  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   8.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   8.6  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   8.6  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   8.6  

>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 17/224 (7%)
 Frame = +3

Query: 102 PKGEGVLLRQATDRFIVAYGRRPEVAAAAPGRVNLIGEHVDYCEGFVLPVAIPFLTVVVG 281
           PK       +  + F   Y  +P+  + +PGRVN+IGEH+DY    VLP+AI    +V  
Sbjct: 16  PKENKARYAKLLNSFEQKYHCKPDFFSRSPGRVNIIGEHIDYNYFSVLPMAIDVDVIVSV 75

Query: 282 SYNNTDVCRVITVLASGEELEASFPAT-IKAELRPGQPEWANYI--------KGVIANFP 434
           + ++     +       +E     P+     E+      W NY         K ++  +P
Sbjct: 76  TTSDDAKVELNNTNPEFKEEILELPSDGAVIEINKTHHTWGNYFRCSMIVAHKYILEKYP 135

Query: 435 IKVN-------GFDIVVVSDVPMGSGVSSSAAIEVA-VFTLLEGLTGRMVSLVEKAKLCQ 590
             V+       G  ++   +VP G G+SSSAA  VA +  +L+      ++  +  K+  
Sbjct: 136 ELVSGGKKPLKGLKLIFDGNVPTGGGLSSSAAFCVASILAILKANGINTITKEDLVKISV 195

Query: 591 KAEHDFPGMPCGIMDQYIVTMGKKDHALLIDCKSLEAKQVPIKM 722
            +EH + G+  G MDQ     G+++ ALL+  K  +    P KM
Sbjct: 196 VSEH-YVGVNTGGMDQCASIYGEQNKALLVQFKP-KLMATPFKM 237


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
 Frame = -2

Query: 571 STKLTILPVSPSSSVNTATSMAALLETPEPIGTSDTTTISKPFTFIGKLAITPLI*LAHS 392
           ST  T +P+ P+S+ +T T+ + L  T     TS TT+ S P      L+ TP   +  +
Sbjct: 199 STSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPTGGSSSLS-TP---ITPT 250

Query: 391 GWPGRNSALMVAGKLASNSSPDANTVITRQTSVLLYDPTTTVRNGIATGRTKPSQ*STCS 212
             P   S+  +     S SS D N+     TS      T+    G +T    P+   T +
Sbjct: 251 VPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 310

Query: 211 PMRLTRPGAAAATS-GRLPYATMNLSVACRNNTPSP 107
               T P  A+ +S G       + S +C  +T  P
Sbjct: 311 SSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 42/155 (27%), Positives = 64/155 (41%)
 Frame = -2

Query: 571 STKLTILPVSPSSSVNTATSMAALLETPEPIGTSDTTTISKPFTFIGKLAITPLI*LAHS 392
           ST  T +P+ P+S+ +T T+   L  T     TS TT+ S P T       TP   +  +
Sbjct: 142 STSSTSIPIPPTSTSSTDTNSNPLPTT----STSCTTSTSIPPTGGSSSLSTP---ITPT 194

Query: 391 GWPGRNSALMVAGKLASNSSPDANTVITRQTSVLLYDPTTTVRNGIATGRTKPSQ*STCS 212
             P   S+  +     S SS D N+     TS      + T    I TG +     S  +
Sbjct: 195 VPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-----SCTTSTSIPTGGSS----SLST 245

Query: 211 PMRLTRPGAAAATSGRLPYATMNLSVACRNNTPSP 107
           P+  T P   + +S  +P    + S    N++P P
Sbjct: 246 PITPTVP-PTSTSSTSIPIPPTSTSSTDTNSSPLP 279



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 7/196 (3%)
 Frame = -2

Query: 586  HSLAFSTKLTILPVSPSS-SVNTATSMAALLETPEPIGTSD-TTTISKPFTFIGKLAITP 413
            ++++ ST +T  PV+ ++ + +T+    +   T  P+ T++ TT+ S P+T       TP
Sbjct: 514  YTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTS------TP 567

Query: 412  LI*LAHSGWPGRNSALMVAGKLASNSSPDANTVITRQTSVLLYDPTTTVRNGIATGRTKP 233
            +           +S   ++      S+P   T  T  TSVL      T  N  ++  T+ 
Sbjct: 568  VT----------SSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQV 617

Query: 232  SQ*ST-----CSPMRLTRPGAAAATSGRLPYATMNLSVACRNNTPSPFGIASQFIILTQN 68
            S  ST      S  ++T   +   TS      T   S +   ++ S    ++ F   + +
Sbjct: 618  SWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSS 677

Query: 67   IYISFVITIPLSTERT 20
             Y +  +T   ST  T
Sbjct: 678  FYSN--VTTSSSTVST 691


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 32.7 bits (71), Expect = 0.056
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 10/189 (5%)
 Frame = -2

Query: 538  SSSVNTATSMAALLETPEPIGTSDTTTISKPFTFIGKLAITPLI*LAHSGWPGRNSALMV 359
            SSS+++ TS++  +     +  + T+T S+  + +G    +       S W    S+  +
Sbjct: 882  SSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSA----TSSSWTAETSSSAI 937

Query: 358  AGKLASNSSPDANTVITRQTSVLLYDPTTTV------RNGIATGRTKPSQ*STCSPMRLT 197
               +A++ +P +++  +  +S    DP+T         + IAT     S  S+ +    T
Sbjct: 938  TSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASAT 997

Query: 196  RPG----AAAATSGRLPYATMNLSVACRNNTPSPFGIASQFIILTQNIYISFVITIPLST 29
                   AAA+ +G    +    SV   +++ S    AS     T +I ++ V     ST
Sbjct: 998  DSSTSSIAAASVTGSSTSSVATASVT--DSSTSSVATASATDSSTSSIAVASV--TGSST 1053

Query: 28   ERTATASLT 2
               ATAS T
Sbjct: 1054 SSVATASAT 1062


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 3/242 (1%)
 Frame = -2

Query: 724 SILIGTCFASKDLQSISNAWSFLPIVTMY*SMMPHGIPGKSCSAF*HSLAFSTKLTILPV 545
           S +I T   S      S++ S+   +T   + + +   G   + F  S  F +  +++P 
Sbjct: 298 SSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPT 357

Query: 544 SPSSSVNTATSMAALLETPEPIGTSDTTTISKPFTFIGKLAIT--PLI*LAHSGWPGRNS 371
           S  SSV++ TS  +   T     T+  T+I+   T  G    T  P    ++S     + 
Sbjct: 358 SVPSSVSSFTSSNSSYTTTL---TASNTSITYTGTGTGSATFTSSPPF-YSNSSVIPTSV 413

Query: 370 ALMVAGKLASNSSPDANTVITRQTSVLLYDPTTTVRNGIATGRTKPSQ*STCSPMRLTRP 191
              V+   +SNSS    T +T   + + +  T T   G AT  + P   S  S +  + P
Sbjct: 414 PSSVSSFTSSNSS--YTTTLTASNTTVTFTGTGT---GSATFTSSPPFYSNSSVIPTSAP 468

Query: 190 GAAAA-TSGRLPYATMNLSVACRNNTPSPFGIASQFIILTQNIYISFVITIPLSTERTAT 14
            + ++ TS    Y T  L+ +    T +  G  S     +   Y +  I +P +   + +
Sbjct: 469 SSVSSFTSSNSSYTT-TLTASNTTVTFTGTGTGSATATSSSPYYSNSSIIVPTTVSTSGS 527

Query: 13  AS 8
            S
Sbjct: 528 VS 529



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 3/153 (1%)
 Frame = -2

Query: 598 SAF*HSLAFSTKLTILPVSPSSSVNTATSMAALLETPEPIGTSDTTTISKPFTFIGKLAI 419
           SA   S  F +  +++P S  SSV++ TS ++   T     T+  T+++   T  G    
Sbjct: 286 SATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTL---TASNTSVTYTGTGTGSATF 342

Query: 418 T--PLI*LAHSGWPGRNSALMVAGKLASNSSPDANTVITRQTSVLLYDPTTTVRNGIATG 245
           T  P    ++S     +    V+   +SNSS    T +T   + + Y  T T   G AT 
Sbjct: 343 TSSPPF-YSNSSVIPTSVPSSVSSFTSSNSS--YTTTLTASNTSITYTGTGT---GSATF 396

Query: 244 RTKPSQ*STCSPMRLTRPGAAAA-TSGRLPYAT 149
            + P   S  S +  + P + ++ TS    Y T
Sbjct: 397 TSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTT 429


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 447 GFDIVVVSDVPMGSGVSSSAAIEVAVFTLL 536
           G  + + S VP+G+G+ SSA I V V T L
Sbjct: 123 GCTLTISSQVPLGAGLGSSATISVVVATSL 152


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 6/145 (4%)
 Frame = -2

Query: 559 TILPVSPSSSVNTATSMAALLETPE-PIGTSDTTTISKPFTF---IGKLAI--TPLI*LA 398
           T  P +  S   T  +++  + +P   +  +     S P +F   I  L +   PL   +
Sbjct: 223 TTFPTAMKSQSTTKPTLSNSVSSPSIQVSNNQNANNSTPLSFHAPIPPLHVPAVPLTSAS 282

Query: 397 HSGWPGRNSALMVAGKLASNSSPDANTVITRQTSVLLYDPTTTVRNGIATGRTKPSQ*ST 218
           HS   G++       K   NSS D     TR +S        T     A  +T  S+  +
Sbjct: 283 HSSSDGKSRKHPSPYKPYLNSSHDTLGSSTRPSSADTAGSPATSPPATADSKTIVSKTIS 342

Query: 217 CSPMRLTRPGAAAATSGRLPYATMN 143
            S  + T P      S    YA MN
Sbjct: 343 ASTTQQTEPLQQTTPSSDFEYAIMN 367


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = -2

Query: 619 GIPGKSCSAF*HSLAFSTKLTILPVSPSSSVNTATSMAALLETPEPIGTSDTTTIS 452
           G  GK  +A   S +FS+K       PSSS  TAT +     TP   G SD +T S
Sbjct: 288 GPGGKDATAS-SSSSFSSKREEAAAEPSSS--TATDIPPPYSTPSVAGASDYSTPS 340


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
 Frame = -2

Query: 604 SCSAF*HSLAFSTKLTILPVSPSSSVNTATSMAALLETPEPIGTSDTTTISKPFTFIGKL 425
           S S+   S + S+ + I   + SS  ++++S ++   +  P  +S   T     TFI  +
Sbjct: 194 SSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTV 253

Query: 424 AITPLI*LA--HSGWPGRNSALMV-AGKLASNSSPDANTVI 311
            +TP    +   S  P   +AL + A K ++++S +A  ++
Sbjct: 254 TVTPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAGAIV 294


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 361 VAGKLASNSSPDANTVITRQTSVLLYDPTTTVRNGIATGRT 239
           +AGKLA +     +  +  Q   +L+ P+T V+NGI T  T
Sbjct: 247 LAGKLAQDEHWRCSDFLLHQN--ILFPPSTLVQNGIVTYST 285


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 202 LTRPGAAAATSGRLPYATMNLSVACRNNTPSPFGIA 95
           L RPG  A T G  PYA     V    N  S  GI+
Sbjct: 346 LARPGYMATTDGVWPYAYSQCDVGITPNQSSYDGIS 381


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 198 VNLIGEHVDYCEGFVLPVA-IPFLTVVVGSYNNT 296
           +N +GE  DY E F LPV  IP  +    SYN T
Sbjct: 179 INGLGERDDYLEAFKLPVCMIPGGSGNAFSYNAT 212


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -2

Query: 550 PVSPSSSVNTATSMAALL 497
           PVS S+S N+A+S+AALL
Sbjct: 27  PVSSSNSANSASSVAALL 44


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 36/180 (20%), Positives = 75/180 (41%)
 Frame = -2

Query: 700 ASKDLQSISNAWSFLPIVTMY*SMMPHGIPGKSCSAF*HSLAFSTKLTILPVSPSSSVNT 521
           +S  L S S + S +P  +   S     +   S S+   S + S+ +     S SSS  +
Sbjct: 226 SSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTS 285

Query: 520 ATSMAALLETPEPIGTSDTTTISKPFTFIGKLAITPLI*LAHSGWPGRNSALMVAGKLAS 341
            +S  +   +     TS ++TIS   +     + T       S     +S    +  ++S
Sbjct: 286 TSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISS 345

Query: 340 NSSPDANTVITRQTSVLLYDPTTTVRNGIATGRTKPSQ*STCSPMRLTRPGAAAATSGRL 161
           +SS  +++  +  TS      +++  + +++  +  S   T S    +RP ++++ S  L
Sbjct: 346 SSSSPSSSSFSSTTS--SSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSL 403


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 636 QYIVTMGKKDHALLIDCKSLE 698
           +Y+V++GK D A+ + CK+ E
Sbjct: 204 RYLVSIGKDDEAIQVMCKNAE 224


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 614 PREVVLCLLTQLGF 573
           PREV+LC+L QL F
Sbjct: 140 PREVLLCILQQLNF 153


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 499 LETPEPIGTSDTTTISKPFT 440
           L TP PIG+ D T +  P+T
Sbjct: 217 LTTPRPIGSDDLTHMYDPYT 236


>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 402 NYIKGVIANFPIKVNGFDIVVVSDVPMGSGV 494
           ++++ V  +F +  NGFD  VVSD+ + S V
Sbjct: 12  SFVRSVWQDF-VNTNGFDAHVVSDIQIISAV 41


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 77  NTKYLYFFCYHNPVE 33
           NTK L+  C HNPV+
Sbjct: 223 NTKSLFGLCVHNPVD 237


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 230  AIVNVFSDEVDASRRRCSDFRSSA-VCDYESVSGLSQQ 120
            +++N+ S  +DAS R  S F +S  + +YE +  ++++
Sbjct: 906  SLINIVSRLLDASNRSTSSFETSKNMEEYERIDAMAKE 943


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 80 FNTKYLYFFCYHNPVEYRAHGHRF 9
          F+  YL F C HN   YRA    F
Sbjct: 28 FSLPYLKFDCDHNDKNYRASNRPF 51


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = -2

Query: 715 IGTCFASKDLQSISNAWSFLPIVTMY*SMMPHGIPGKSCSAF*HSLAFSTKLTILPVSPS 536
           + TCF +  LQ    + + L  V    +++   +  +  +   HS+ F+ ++   PV+  
Sbjct: 504 VKTCFVAHSLQGEDTSMAILDFVAQDKALLTMNVTRQEAADALHSVGFTAEMQENPVASL 563

Query: 535 S 533
           S
Sbjct: 564 S 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,051
Number of Sequences: 5004
Number of extensions: 72027
Number of successful extensions: 277
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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