Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B21
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.0  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 160 ADDRKSLQRRRDASTSSENTLTI 228
           ADD  SL+R+R    +S+N L +
Sbjct: 327 ADDPDSLRRKRQKINNSQNALVL 349


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 267 TVVVGSYNNTDVCRVITVLASGEELEASFPATIKAE 374
           T+V+ + NNT +   + +    +E E   P T + +
Sbjct: 486 TIVINNRNNTSMKGTVRIFIGPKEDERGLPFTFREQ 521


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 224 VNVFSDEVDASRRRCSDFRSSAVCDYESVSGLSQQHPLA 108
           +NV SD+     R    +   +   YE  SG+   H +A
Sbjct: 95  LNVVSDKTGNGGRLLQPYPDWSFAKYEDCSGIVSAHKIA 133


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 311 HATDICVVVRSHDDG 267
           H TDI V+V + DDG
Sbjct: 215 HITDIVVLVVAADDG 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,005
Number of Sequences: 438
Number of extensions: 6442
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)