Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B19
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    36   0.010
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    28   2.0  

>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -3

Query: 750 LIICIFLGIGKRFHTNGTLHTGSTFFFYLFADSIRGYSSYAQIYLWYYM-DCLYTLDLVQ 574
           ++IC+  G G  F    T  + +   F +   + RGY+ YA +Y++Y M D ++      
Sbjct: 350 VLICVIWGGGLAFQLKYTRKSVAESDFVVTDFTHRGYTGYAFLYIFYGMLDAIFQSYAYW 409

Query: 573 LLTDWSRN*ER*IVYYSIYKS 511
           ++   S +  +  VY   YKS
Sbjct: 410 IIGSLSNDTNKLAVYMGFYKS 430


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 97  LGAIIKCESTITNYS*ILSLLTVFSHTSYRPA 2
           + A +K  S   NY  ILSL++V+ H+ +RP+
Sbjct: 345 VSAFLKPLSEKGNYKDILSLISVWQHSVWRPS 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,037
Number of Sequences: 5004
Number of extensions: 66869
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)