Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B19
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    28   0.13 
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    28   0.13 
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    28   0.13 
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    28   0.13 
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    28   0.13 
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    28   0.13 
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    28   0.13 
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    27   0.17 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.52 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.5  

>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 474 YNLCDYLTMNFNGFYIYYNKLFSVLNYVTSL*VVVLDLMYKDN 602
           YN  +Y   N N  Y  Y KL+  +NY+  + V V   +Y  N
Sbjct: 89  YNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGN 131


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 474 YNLCDYLTMNFNGFYIYYNKLFSVLNYVTSL*VVVLDLMYKDN 602
           YN  +Y   N N  Y  Y KL+  +NY+  + V V   +Y  N
Sbjct: 89  YNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGN 131


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 474 YNLCDYLTMNFNGFYIYYNKLFSVLNYVTSL*VVVLDLMYKDN 602
           YN  +Y   N N  Y  Y KL+  +NY+  + V V   +Y  N
Sbjct: 89  YNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGN 131


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 474 YNLCDYLTMNFNGFYIYYNKLFSVLNYVTSL*VVVLDLMYKDN 602
           YN  +Y   N N  Y  Y KL+  +NY+  + V V   +Y  N
Sbjct: 89  YNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGN 131


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 474 YNLCDYLTMNFNGFYIYYNKLFSVLNYVTSL*VVVLDLMYKDN 602
           YN  +Y   N N  Y  Y KL+  +NY+  + V V   +Y  N
Sbjct: 89  YNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGN 131


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 474 YNLCDYLTMNFNGFYIYYNKLFSVLNYVTSL*VVVLDLMYKDN 602
           YN  +Y   N N  Y  Y KL+  +NY+  + V V   +Y  N
Sbjct: 89  YNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGN 131


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 474 YNLCDYLTMNFNGFYIYYNKLFSVLNYVTSL*VVVLDLMYKDN 602
           YN  +Y   N N  Y  Y KL+  +NY+  + V V   +Y  N
Sbjct: 89  YNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGN 131


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 474 YNLCDYLTMNFNGFYIYYNKLFSVLNYVTSL*VVVLDLMYKDN 602
           YN  +Y   N N  Y  Y KL+  +NY+  + + V   +Y  N
Sbjct: 89  YNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPIPVPVPIYCGN 131


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +3

Query: 498 MNFNGFYIYYNKLF--SVLNYVTSL*VVVLDLMYKDNPYSTIDISGRSSNNLLCYQRKGR 671
           +N N FY+ ++KL+  SV++   SL V  +     DN     D++G     L+ ++R G 
Sbjct: 291 LNVNEFYMAFSKLYSVSVVSLDKSLEVNHISARVGDNVEIKCDVTGTPPPPLV-WRRNGA 349

Query: 672 KKKCSQYVMYR*YGNVFRYRERYK*LNAISYT 767
             +       R + +   Y  + + ++A +YT
Sbjct: 350 DLETLNEPEIRVFNDGSLYLTKVQLIHAGNYT 381


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 474 YNLCDYLTMNFNGF-YIYYNKLFSVLNYVTSL*VVVLDLMYKDN 602
           YN  +Y   N+N   Y  Y KL+  +NY+  + V V   +Y  N
Sbjct: 96  YNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGN 139


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 703 RYITYWEHFFFLPFR**HKRLFEL 632
           RY++ WE  +FL       R+F L
Sbjct: 227 RYVSQWEEVYFLNMASVFMRIFNL 250


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 450 IILCCGALYNLCDYLTMNFNGFYIYYNKLFSVLNYVT 560
           + L C A  N    +T   +GF +  N  F +  YVT
Sbjct: 439 VSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVT 475


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 450 IILCCGALYNLCDYLTMNFNGFYIYYNKLFSVLNYVT 560
           + L C A  N    +T   +GF +  N  F +  YVT
Sbjct: 439 VSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVT 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,998
Number of Sequences: 438
Number of extensions: 4779
Number of successful extensions: 25
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)