Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B19
         (875 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26860.1 68416.m03361 self-incompatibility protein-related si...    31   0.76 
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si...    30   2.3  
At2g02770.1 68415.m00220 COP1-interacting protein-related simila...    28   9.4  

>At3g26860.1 68416.m03361 self-incompatibility protein-related
           similar to S3 self-incompatibility protein [Papaver
           rhoeas] GI:1107841
          Length = 122

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 208 SKNEEMKSLMLPXRGKRIFYFSTNLFS*QQLCCT 107
           SK++ +  L++P  G R  YF TN+F+  +  CT
Sbjct: 41  SKDDVIGPLIIPIGGHRFNYFGTNIFATTRFMCT 74


>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
           similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
           3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
           domain
          Length = 1113

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 725 IPRKIQIIKCN*LYVSLKKNPLN 793
           I R I+ +KC+ LYV +KKNP N
Sbjct: 443 ITRAIEWMKCSYLYVRMKKNPEN 465


>At2g02770.1 68415.m00220 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646, COP1-interacting protein 4.1
           (CIP4.1) [Arabidopsis thaliana] GI:13160650
          Length = 548

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 459 CCGALYNLCDYLTMN 503
           CCG LY+L D LT+N
Sbjct: 59  CCGQLYHLVDSLTLN 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,469,429
Number of Sequences: 28952
Number of extensions: 307945
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)