Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B17
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    33   0.062
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    31   0.25 
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    31   0.25 
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    30   0.33 
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    27   4.1  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   9.4  

>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 26/135 (19%), Positives = 57/135 (42%)
 Frame = +1

Query: 235 DLDNVRLVRMEDVQPSREGRIEIFETCIIDHIEYDNECVIGDDQTNVGGIVSIQTDETEQ 414
           DLD+++ + M+D QPS E  +   +  I++     +  ++    T++    S +  ++  
Sbjct: 118 DLDDLKKLSMKDSQPSLEKPVSYVDEPILEQWALSDLQILPPSSTDLLSPDSQKLSKSSS 177

Query: 415 SASEFIVPEILEVPVENEKLDVIPHTPDRWPTLEILPGGVIKPADKADNQNSRKSRVTLN 594
              +F  P +   P  N  L   P +  R+    +    ++ P    DN++ +  +  + 
Sbjct: 178 DLPQFDYPSLNSSPTFNSNL---PISSSRFEKTSLSDSKLVSPEPLDDNKDIQFIKKPIY 234

Query: 595 SEMIYACAKCSQTFK 639
           +       K + TFK
Sbjct: 235 TRTSEPRPKPAGTFK 249


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 607 YACAKCSQTFKFLYCLVKHVRWHENEQKVKKSNIADLILSXNRK 738
           Y C  C++ F  L  L +H+R H NE+    S I  L     R+
Sbjct: 70  YVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQ 113


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 478 VIPHTPDRWPTLEILPGGVIKP 543
           V+ H  DRW T+ I+PG  I+P
Sbjct: 278 VVEHLDDRWLTIPIIPGECIRP 299


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 325 HIEYDNECVIGDDQTNVGGIVSIQTDETEQSASEFIVPEILEVPVENEK 471
           HIE D+E  + DD     G+ S   + TE   ++  V ++LEV V N K
Sbjct: 36  HIENDSETAVSDD-----GLFSNTEEATEAPEADVPVKKVLEVAVPNFK 79


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/84 (21%), Positives = 31/84 (36%)
 Frame = -2

Query: 340 YRTLYDR*YKFQIFQCALRATAGHPPYALIVRYLGLRPQERSRTSSSNHSCFNSKGMFTG 161
           +   Y R  + +I  C  R T G P    ++R +     + + T         +  + + 
Sbjct: 138 FDNFYVRRLQHRINDCFSRPTMGVP--GRVIRLMNRYSTDSNSTFKLTGDTSLALNVSSY 195

Query: 160 KYFGFPVEHSTCRCYIGKRNNKYG 89
            Y GF   H  C   + +   KYG
Sbjct: 196 NYLGFAQSHGPCATKVEEAMQKYG 219


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 496 DRWPTLEILPGGVIKPADKADNQNSRK 576
           DRW     LPGG     DK+D Q + +
Sbjct: 72  DRWSGHMALPGGTRSLTDKSDIQTAHR 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,538
Number of Sequences: 5004
Number of extensions: 58400
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)