Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B17
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi...    31   0.88 
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    30   1.5  
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f...    30   2.0  
At5g16360.1 68418.m01912 NC domain-containing protein contains P...    29   3.5  
At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein ...    29   4.7  
At5g06140.1 68418.m00683 phox (PX) domain-containing protein sim...    28   8.2  
At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein ...    28   8.2  

>At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing
           protein low similarity to post-transcriptional control
           of chloroplast gene expression CRP1 [Zea mays]
           GI:3289002; contains Pfam profile PF01535: PPR repeat
          Length = 855

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = +1

Query: 340 NECVIGDDQTNVGGIVSIQTD--ETEQSASEFIVPEILEV-PVENEKLDVIPHTPDRWPT 510
           N C   +D++ V     I+T+  +T + AS         + PVE  K  V+P T + +  
Sbjct: 30  NSCTCAEDESGVSKRQQIRTEVVQTGKRASNLAAGLAGSILPVEAGKPLVVPKTVEHFTR 89

Query: 511 LEILPGGVIKPA--DKADNQN 567
             +LP  V  PA   KAD+ N
Sbjct: 90  PSLLPQHVSSPALPGKADSVN 110


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/53 (20%), Positives = 26/53 (49%)
 Frame = +1

Query: 592 NSEMIYACAKCSQTFKFLYCLVKHVRWHENEQKVKKSNIADLILSXNRKKQDK 750
           N +++  C +C + F +  CL  H++   +E+  ++S      +   RK+  +
Sbjct: 73  NKKILIRCKECGKGFLYEKCLFNHLQVTHSEESTRRSLFCRFSIVQRRKRSKR 125


>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
           finger (C3HC4-type RING finger) family protein (BRCA1)
           contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
          Length = 1276

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 517 ILPGGVIKPADKADNQNSRKSRVTLNSEMIYACAKCS 627
           IL  G+ +  DK D++N+RKS V  +   +    KCS
Sbjct: 837 ILTAGLNQGGDKQDSRNNRKSTVGKDDHTMQVIEKCS 873


>At5g16360.1 68418.m01912 NC domain-containing protein contains Pfam
           domain, PF04970: NC domain
          Length = 283

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298 EIFETCIIDHIEYDNECVIGDDQTNVGGIVS 390
           +I +  I +H   D +C+   DQ+N+GG++S
Sbjct: 59  KIIDISIPNHGRRDKKCIDCGDQSNLGGVIS 89


>At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 284

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +1

Query: 511 LEILPGGVIKPADKADNQNSRKSRVTLNSE----MIYACAKCSQTFKFLYCLVKHVRWHE 678
           L +L  G + P+   D +NSRK    ++SE     +Y C  C++TF     L  H   H+
Sbjct: 79  LIMLARGTVLPSP--DLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRASHK 136


>At5g06140.1 68418.m00683 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 402

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 475 LVFRFQLELLVFREQ*TQKRSVLFHQF 395
           +V R + E++ F+EQ T++  V FHQF
Sbjct: 348 IVKRMEDEIVRFQEQKTEEMGVAFHQF 374


>At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 170

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 547 DKADNQNSRKSRVTLNSEMIYACAKCSQTFKFLYCLVKHVRWHENE-QKVKKSNI 708
           DK+   + +K   T  +   + C  C   F     L  H+R H NE ++ K SN+
Sbjct: 66  DKSLPGSPKKKPKTTTTTTAHTCPICGLEFPMGQALGGHMRKHRNEKEREKASNV 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,949,293
Number of Sequences: 28952
Number of extensions: 290368
Number of successful extensions: 831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)