Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B16
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)            64   8e-11
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score =  103 bits (248), Expect = 1e-22
 Identities = 59/150 (39%), Positives = 82/150 (54%), Gaps = 1/150 (0%)
 Frame = +3

Query: 180 VTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXX 359
           ++ L  P  +   +     I+KIV +I+ L LLEVSEL+++LK  L + D          
Sbjct: 47  MSSLAAPDADDSQRHYPNHIKKIVDDISKLTLLEVSELNELLKVTLKIQDVPMMAAGAMS 106

Query: 360 XXXXXXXXXXXXXXXXXX-TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESV 536
                              T FTVK+T FD   KV LIKE+K L+ G NLVQAKKFVE +
Sbjct: 107 APAAAQEAASEEPEKEAEPTEFTVKLTGFDAAAKVKLIKEIKNLIPGMNLVQAKKFVEGL 166

Query: 537 PTVVKADISKDEAEKLKEALTKVGAIIEIE 626
           P  V+  ++K+E+E+LK+AL   G  +EIE
Sbjct: 167 PQNVREKVNKEESEQLKKALEAAGGTVEIE 196


>SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)
          Length = 305

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
 Frame = +3

Query: 180 VTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXX 359
           ++ L  P  +   +     I+KIV +I+ L LLEVSEL+++LK  L + D          
Sbjct: 194 MSSLAAPDADDSQRHYPNHIKKIVDDISKLTLLEVSELNELLKVTLKIQDVPMMAAGAMS 253

Query: 360 XXXXXXXXXXXXXXXXXX-TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQ 512
                              T FTVK+T FD   KV LIKE+K L+ G NLVQ
Sbjct: 254 APAAAQEAASEEPEKEAEPTEFTVKLTGFDAAAKVKLIKEIKNLIPGMNLVQ 305


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 177  TVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNL 323
            T  P   P P   D P  P++E       NL  ++V  LS+ +KK+L L
Sbjct: 1041 TPPPTEPPTPPPTDPPTQPRVE------LNLVHIDVYNLSKQVKKKLGL 1083


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,751
Number of Sequences: 59808
Number of extensions: 281385
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)