Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B16
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical pr...   118   4e-27

>Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical
           protein W09D10.3 protein.
          Length = 173

 Score =  118 bits (284), Expect = 4e-27
 Identities = 64/142 (45%), Positives = 86/142 (60%)
 Frame = +3

Query: 198 PVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXX 377
           P+P   D+ +S K+  +V EI NL+LL+VS+L+  LKKRLN+PD                
Sbjct: 34  PLPSE-DRAISAKVSSLVEEIANLSLLDVSDLNWALKKRLNIPDQPLMAAAAAAPAAQAE 92

Query: 378 XXXXXXXXXXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKAD 557
                        +FTVK+TKFDD +K+A+IKE++  + G NLVQAKKFVE+ P  VK D
Sbjct: 93  AEAASDVPQKM--TFTVKLTKFDDTKKIAIIKEIRNAIPGLNLVQAKKFVETAPVNVKED 150

Query: 558 ISKDEAEKLKEALTKVGAIIEI 623
           + K EA++LK  L K GA IEI
Sbjct: 151 LGKAEADELKAILEKAGATIEI 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,296
Number of Sequences: 27780
Number of extensions: 224526
Number of successful extensions: 794
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)