Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_B16
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36420.1 68417.m05174 ribosomal protein L12 family protein 69 2e-12
At4g37660.1 68417.m05326 ribosomal protein L12 family protein ri... 64 9e-11
At1g70190.1 68414.m08077 ribosomal protein L12 family protein co... 61 6e-10
At2g03130.1 68415.m00266 ribosomal protein L12 family protein 55 5e-08
At3g06040.2 68416.m00691 ribosomal protein L12 family protein co... 53 2e-07
At3g06040.1 68416.m00690 ribosomal protein L12 family protein co... 53 2e-07
At3g27850.1 68416.m03473 50S ribosomal protein L12-3, chloroplas... 48 5e-06
At3g27830.1 68416.m03471 50S ribosomal protein L12-1, chloroplas... 48 5e-06
At3g27840.1 68416.m03472 50S ribosomal protein L12-2, chloroplas... 39 0.004
At5g57870.2 68418.m07239 eukaryotic translation initiation facto... 34 0.11
At5g57870.1 68418.m07238 eukaryotic translation initiation facto... 34 0.11
At1g10060.1 68414.m01134 branched-chain amino acid aminotransfer... 31 0.75
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 30 1.7
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c... 29 3.0
At5g03670.1 68418.m00326 expressed protein 28 5.3
At2g28220.1 68415.m03426 aspartyl protease family protein contai... 28 5.3
At1g66370.1 68414.m07538 myb family transcription factor (MYB113... 28 5.3
>At4g36420.1 68417.m05174 ribosomal protein L12 family protein
Length = 179
Score = 69.3 bits (162), Expect = 2e-12
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Frame = +3
Query: 228 SPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXX 407
S + KIV E++NL LLE +L+++L+++LN+ +
Sbjct: 42 SENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEG 101
Query: 408 XX------TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKD 569
T+F V + +D K+ +IKEV+ + L +AK VE PT++K +SK+
Sbjct: 102 KEKKKEAKTAFDVMLQAYDAVSKIKVIKEVR-TITALGLKEAKDLVEKAPTLLKKGVSKE 160
Query: 570 EAEKLKEALTKVGAIIEIE 626
EAEK+ E L VGA + +E
Sbjct: 161 EAEKIIEKLKAVGAKVAME 179
>At4g37660.1 68417.m05326 ribosomal protein L12 family protein
ribosomal protein L12, Liberobacter africanum, U09675
Length = 167
Score = 64.1 bits (149), Expect = 9e-11
Identities = 38/131 (29%), Positives = 64/131 (48%)
Frame = +3
Query: 234 KIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 413
K+E+I ++ LN +E+ + S + ++ L
Sbjct: 41 KLERIADDLLKLNRIELYDYSLLFSHKIGL---NRYGSAVAVTGSVGDASASTETKTAEK 97
Query: 414 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 593
T+F VK+ KF+ K+ +IKE++ + L +AK VE P +VK ++K+EAEK+ E
Sbjct: 98 TTFDVKLEKFEAASKIKVIKEIRAFTD-LGLKEAKALVEKAPVIVKNGLTKEEAEKIMEK 156
Query: 594 LTKVGAIIEIE 626
L VGAI+ +E
Sbjct: 157 LKAVGAIVALE 167
>At1g70190.1 68414.m08077 ribosomal protein L12 family protein
contains similarity to ribosomal protein GI:7270590 from
[Arabidopsis thaliana]
Length = 208
Score = 61.3 bits (142), Expect = 6e-10
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Frame = +3
Query: 222 PVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXX 401
P + ++ ++V EI++L LLE+SEL ++ K+ + +
Sbjct: 66 PPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGVGVGGGGGMV 125
Query: 402 XXXXTS---------FTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKA 554
S F +K+ F+ K+ +IKE++ + L +AK VE P ++KA
Sbjct: 126 SQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTD-LGLKEAKALVEKTPAILKA 184
Query: 555 DISKDEAEKLKEALTKVGAIIEIE 626
+SK+E EK+ E L +GA + +E
Sbjct: 185 GLSKEEGEKILEKLKALGAKVVLE 208
>At2g03130.1 68415.m00266 ribosomal protein L12 family protein
Length = 110
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/66 (40%), Positives = 42/66 (63%)
Frame = +3
Query: 414 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 593
T F VK+ F+ + K+ +IKEV+ ++ G L +A K V PTV+K +SK+E E++ E
Sbjct: 22 TVFEVKLESFEARAKIKIIKEVRRII-GVGLKEAMKLVVKAPTVLKTGLSKEEGEEVVEK 80
Query: 594 LTKVGA 611
L +GA
Sbjct: 81 LNALGA 86
>At3g06040.2 68416.m00691 ribosomal protein L12 family protein
contains similarity to 50S ribosomal protein L12-C,
chloroplast precursor GB:P36212 from [Arabidopsis
thaliana]
Length = 186
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +3
Query: 414 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 593
T+F VK+ KF+ K+ +IKEV+ L +AK+ VE VP ++K ++K+EA ++
Sbjct: 117 TAFDVKLEKFNASDKIKVIKEVR-TFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAK 175
Query: 594 LTKVGAIIEIE 626
+ VG I +E
Sbjct: 176 IKAVGGIAVME 186
>At3g06040.1 68416.m00690 ribosomal protein L12 family protein
contains similarity to 50S ribosomal protein L12-C,
chloroplast precursor GB:P36212 from [Arabidopsis
thaliana]
Length = 186
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +3
Query: 414 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 593
T+F VK+ KF+ K+ +IKEV+ L +AK+ VE VP ++K ++K+EA ++
Sbjct: 117 TAFDVKLEKFNASDKIKVIKEVR-TFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAK 175
Query: 594 LTKVGAIIEIE 626
+ VG I +E
Sbjct: 176 IKAVGGIAVME 186
>At3g27850.1 68416.m03473 50S ribosomal protein L12-3, chloroplast
(CL12-C) identical to ribosomal protein L12 GB:X68046
[Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
7330-7336 (1994))
Length = 187
Score = 48.4 bits (110), Expect = 5e-06
Identities = 37/130 (28%), Positives = 57/130 (43%)
Frame = +3
Query: 234 KIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 413
KIEKI EI++L L E L L+ + +
Sbjct: 61 KIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEEQ--- 117
Query: 414 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 593
T F V + + ++A+IK V+ L L +AK+ +E +P K I+KDEAE+ K+
Sbjct: 118 TEFDVVINEVPSSSRIAVIKAVRALTS-LALKEAKELIEGLPKKFKEGITKDEAEEAKKT 176
Query: 594 LTKVGAIIEI 623
L + GA + I
Sbjct: 177 LEEAGAKVSI 186
>At3g27830.1 68416.m03471 50S ribosomal protein L12-1, chloroplast
(CL12-A) identical to ribosomal protein L12 GB:X68046
[Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
7330-7336 (1994))
Length = 191
Score = 48.4 bits (110), Expect = 5e-06
Identities = 37/130 (28%), Positives = 57/130 (43%)
Frame = +3
Query: 234 KIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 413
KIEKI EI++L L E L L+ + +
Sbjct: 65 KIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEEQ--- 121
Query: 414 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 593
T F V + + ++A+IK V+ L L +AK+ +E +P K I+KDEAE+ K+
Sbjct: 122 TEFDVVINEVPSSSRIAVIKAVRALTS-LALKEAKELIEGLPKKFKEGITKDEAEEAKKT 180
Query: 594 LTKVGAIIEI 623
L + GA + I
Sbjct: 181 LEEAGAKVSI 190
>At3g27840.1 68416.m03472 50S ribosomal protein L12-2, chloroplast
(CL12-B) identical to ribosomal protein L12 GB:X68046
[Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
7330-7336 (1994))
Length = 193
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +3
Query: 414 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 593
T+F V + ++A+I ++ + +L ++K+ +E P K ++KDEAE+ K
Sbjct: 124 TTFDVVINDVPRGNRIAVITAIRAMTS-LSLSESKELIEGFPKKFKEGVTKDEAEEDKTQ 182
Query: 594 LTKVGAIIEI 623
L + GA + I
Sbjct: 183 LEEAGAKVSI 192
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 776
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 150 SVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLE 281
+V + Q+V PLT+PVP +P PK+ + V + +LLE
Sbjct: 579 TVSAERPAQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLE 622
>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 780
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 150 SVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLE 281
+V + Q+V PLT+PVP +P PK+ + V + +LLE
Sbjct: 583 TVSAERPAQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLE 626
>At1g10060.1 68414.m01134 branched-chain amino acid aminotransferase
1 / branched-chain amino acid transaminase 1 (BCAT1)
nearly identical to SP|Q93Y32 Branched-chain amino acid
aminotransferase 1, mitochondrial precursor (EC
2.6.1.42) (Atbcat-1) {Arabidopsis thaliana}; contains
Pfam profile: PF01063 aminotransferase class IV
Length = 309
Score = 31.1 bits (67), Expect = 0.75
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -1
Query: 295 LSSDTSKRFKLVISKTIFSILGETGLSTP--SGT---GIVRGVTVCVTSCRRTE 149
L +DT K + V + IF + G T + TP SGT GI RG T C S RRTE
Sbjct: 257 LDADTGKNIEEVSAANIFLVKGNT-IVTPATSGTILGGITRGRTKC--SGRRTE 307
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 132 RSLSXCSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLK 308
+SLS L Q+V ++V + +PV + P S KI+++ I + L V E ++ K
Sbjct: 804 QSLSLIDTLLQKVMKSVEIIALPVDLASEDP-SEKIDRLAGYIQEVQLARVEEQEEIEK 861
>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
thaliana]
Length = 791
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +3
Query: 459 VALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEALTKVGAIIE 620
+AL+KE K L E F+LV + + VES+ + ++ +E + + EA T GA +E
Sbjct: 286 LALLKEWKRLCEKFSLVSSTEPVESISELEDEEV--EENDDIDEAST--GAELE 335
>At5g03670.1 68418.m00326 expressed protein
Length = 516
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 126 QWRSLSXCSVLRQEVTQTVTPLTIPVPEGVDKPVS 230
+ +SL C ++ Q V +T + VPEGV+ +S
Sbjct: 392 EMKSLYHCEIITQRVLKTYFEEMVEVPEGVEALIS 426
>At2g28220.1 68415.m03426 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 756
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 138 LSXCSVLRQEVTQTVTPLTIPVPEGVD 218
+S C+++R+ V Q VT + +P P G D
Sbjct: 303 VSYCNLVRKAVEQVVTAVRVPDPSGND 329
>At1g66370.1 68414.m07538 myb family transcription factor (MYB113)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 246
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 99 IXIIKNVNLQWRSLSXCSVLRQEVTQTVTPLTIPV 203
I ++ N+ W SL VL E T+T +T+P+
Sbjct: 195 INLLDGDNMWWESLLEADVLGPEATETAKGVTLPL 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,860,300
Number of Sequences: 28952
Number of extensions: 202480
Number of successful extensions: 591
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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