Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B14
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    29   1.1  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   5.6  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   5.6  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   7.5  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   9.9  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.9  
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.9  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 629 NRFYRHVAEFFLNEYQI*NNQKHGSCERIR 540
           N++Y+    FF+    I N+ KHG C+R R
Sbjct: 160 NQYYQSRNVFFVTPQTILNDIKHGICDRTR 189


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 566 KHGSCERIRETYVEPSGCEHTGGDGKGYH 480
           + G+C++  + Y+   G +H G +G   H
Sbjct: 287 ERGTCKKAHKPYINECGIKHDGIEGVAIH 315


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 61  CTYTKTIASININYTVITIFIQHIN 135
           C +T  +   N NY    IFI H+N
Sbjct: 424 CRHTLNLLDENANYNFSKIFITHVN 448


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 111 YHFYTTYKQFXXXXXXLGIHSP*LTFYFETTFLKYFEIVF 230
           +HFY+ Y  F      L  +SP L FYF  T +  F  +F
Sbjct: 171 FHFYS-YPFFFVDHPPLSSYSPFLWFYFFITIVGNFIPLF 209


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 684 FELSIIS--VCMCIMPLHPVESFLSPRS 607
           +EL+IIS  V  CI+   PV+SFL+ RS
Sbjct: 319 YELTIISKQVLCCILSF-PVDSFLAERS 345


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +3

Query: 639  VKALYTYIQILWITRKFSKLNLTVPDIFHDTVQKHPD---KACFLFK 770
            V  LYT +  +W T + + LN +V DI       HP+     C LF+
Sbjct: 1267 VPVLYT-LDFIWNTLELNGLNHSVKDIEETIELVHPNICTDGCILFQ 1312


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 149 TLTKLFICCIKMVITV*F 96
           TLTK F CC+  ++T+ F
Sbjct: 12  TLTKWFFCCVCTILTMPF 29


>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 618 SPRSRIFSERVSNIEQPEARKL*EN 544
           SP  +   + V NIE+P+AR L EN
Sbjct: 142 SPLWKYLKDLVMNIEEPQARWLSEN 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,595
Number of Sequences: 5004
Number of extensions: 57708
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)