Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B14
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   8e-04
SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8)                     29   3.5  
SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 17/56 (30%), Positives = 33/56 (58%)
 Frame = +3

Query: 651 YTYIQILWITRKFSKLNLTVPDIFHDTVQKHPDKACFLFKDEVWTFKEVEDYXLRV 818
           +T +Q+    R ++  N+ + D+F  T    P+K  F+F+ + WTFKE +++  R+
Sbjct: 69  FTIVQLK--CRYYNYKNVIMADLFESTAASLPNKPAFVFEGKSWTFKEADEFANRI 122


>SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8)
          Length = 129

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 572 CSIFDTRSEKILLRGDKNDSTG--CKGIIHIHTDIMDNSKVQQVESH--CTRYIS*HSAK 739
           C++++ R EK+ ++       G  C+G     T   DN KV  V++H   T  +  H+ K
Sbjct: 9   CAMYELRDEKLKIQRHFTQCQGTQCQGTQCQGTQCQDNVKVHNVKTHNVKTHNVKTHNVK 68

Query: 740 A 742
           A
Sbjct: 69  A 69


>SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 554 CERIRETYVEPSGCEHTGGDGKG 486
           CE I E  V+  GCEHT  D +G
Sbjct: 574 CENINECLVKNGGCEHTCKDYEG 596



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 593 NEYQI*NNQKHGSCERIRETYVEPSGCEH 507
           N YQ+  N K+  CE + E  V  +GCEH
Sbjct: 521 NGYQLKENSKY-VCEDLNECNVANAGCEH 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,456,978
Number of Sequences: 59808
Number of extensions: 389839
Number of successful extensions: 668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)