Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B14
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40938-7|AAK68282.1|   94|Caenorhabditis elegans Hypothetical pr...    32   0.57 
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    32   0.57 
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    30   2.3  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    29   3.1  
U39998-6|ABB88225.1|  182|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U29380-6|AAP68926.1|  272|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine r...    28   9.3  

>U40938-7|AAK68282.1|   94|Caenorhabditis elegans Hypothetical
           protein D1009.1b protein.
          Length = 94

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 615 AIKTIPRDVKALYTYIQILWITRKFSKLNLTVPDIFHDTVQKHPDKACFL 764
           A+ T+PRD   L   I +    R   K +  + +IF + V++HP+K   +
Sbjct: 17  ALATLPRDFAGLKLLISVKSTIRGLFKKDRPIHEIFLNQVKQHPNKVAII 66


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 615 AIKTIPRDVKALYTYIQILWITRKFSKLNLTVPDIFHDTVQKHPDKACFL 764
           A+ T+PRD   L   I +    R   K +  + +IF + V++HP+K   +
Sbjct: 51  ALATLPRDFAGLKLLISVKSTIRGLFKKDRPIHEIFLNQVKQHPNKVAII 100


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = -2

Query: 803 IFHLFKCPYFILE*ETCFIWMLLHCVMKYIWYSEIQLAELSSYP 672
           +F+  KC Y +L+  T  + + +  V+  + +SEI +A++ S+P
Sbjct: 44  LFYSIKCSYIVLKVRTFHMNLSVLTVVLIVQFSEILVAKVCSWP 87


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
            protein protein12 protein.
          Length = 1847

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 790  LNVHTSSLNKKHALSGCFCTVS*NISGTVRFNLLNFRVIHNICMYVYNAFTSRGIV 623
            LN+ +++L  +HA   C  +V   ++G V    +  +++      VYNA  SRG+V
Sbjct: 1683 LNIKSAALFTEHAKK-CQISVENTLTGQVIRVPVTVQLLDETAKQVYNALESRGVV 1737


>U39998-6|ABB88225.1|  182|Caenorhabditis elegans Hypothetical
           protein ZK622.5 protein.
          Length = 182

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 383 FYHTILFIVLFFKKVNSSNGRLLYHIA 303
           F H I+F VL F KVN+  G+  +H+A
Sbjct: 4   FSHLIIFAVLLFDKVNTLGGK-PFHVA 29


>U29380-6|AAP68926.1|  272|Caenorhabditis elegans Hypothetical
           protein ZK546.17 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 657 MCIMPLHPVESFLSPRSRIFSERVSNIEQ 571
           +C M   P++SFL  R  I SE++  +E+
Sbjct: 86  VCEMVSSPIQSFLEDRLEIMSEKLRKVEE 114


>AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein98 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 535 VSLILSQLPCFWLFYI*YSFRKNSATW 615
           VSLIL Q+  FW+F +   F + S+TW
Sbjct: 107 VSLILYQI--FWIFVVVRDFVRRSSTW 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,564,464
Number of Sequences: 27780
Number of extensions: 317516
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)