Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B14
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 652 YNAFTSRGIVFIAT*QNFF*TSIKYRTT 569
           +NA  +R ++ + T  NFF TS  +R+T
Sbjct: 326 WNAVPARVMIGVTTMLNFFTTSNGFRST 353


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 652 YNAFTSRGIVFIAT*QNFF*TSIKYRTT 569
           +NA  +R ++ + T  NFF TS  +R+T
Sbjct: 295 WNAVPARVMIGVTTMLNFFTTSNGFRST 322


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 652 YNAFTSRGIVFIAT*QNFF*TSIKYRTT 569
           +NA  +R ++ + T  NFF TS  +R+T
Sbjct: 346 WNAVPARVMIGVTTMLNFFTTSNGFRST 373


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 652 YNAFTSRGIVFIAT*QNFF*TSIKYRTT 569
           +NA  +R ++ + T  NFF TS  +R+T
Sbjct: 295 WNAVPARVMIGVTTMLNFFTTSNGFRST 322


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 320 LLYHIAHVIIWISRTF 273
           LLY   HV+IWI   F
Sbjct: 53  LLYQDVHVMIWIGFGF 68


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 144 N*IVYMLYKNGNYSIIYINRGNSF 73
           N IVYM    G+  I+Y N   SF
Sbjct: 201 NTIVYMADDKGDALIVYQNSDESF 224


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 147 SN*IVYMLYKNGNYSIIYINRGNSF 73
           +N +VYM    G+  I+Y N  +SF
Sbjct: 197 ANTLVYMADHKGDALIVYQNADDSF 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,073
Number of Sequences: 438
Number of extensions: 4142
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)