Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B14
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20640.1 68418.m02452 hypothetical protein contains Pfam prof...    28   6.5  
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /...    28   6.5  

>At5g20640.1 68418.m02452 hypothetical protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 215

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 557 FRASGCSIFDTRSEKILLRGDKND 628
           FR  GC +  T+ + +L  GD ND
Sbjct: 50  FRVDGCGVLGTKGKLLLRNGDGND 73


>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains Pfam profile PF00295: Polygalacturonase
           (pectinase)
          Length = 486

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 587 TRSEKILLRGDKNDSTGCKGIIHIHTDIMDNSKVQQVESHC 709
           T +  I ++ D ++ TGCK I+  H +I  +S  + + ++C
Sbjct: 301 TCANDIAIKLDCDEVTGCKDIVMEHINITSSSTKRPLTAYC 341


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,844
Number of Sequences: 28952
Number of extensions: 268106
Number of successful extensions: 545
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)