Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B13
         (821 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    24   1.3  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    24   1.3  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.2  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.1  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.1  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   6.8  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 254 RLL*QFHNSLLTTSLRYTECFRSFGL 331
           + L Q H++L+TTS    + F  FGL
Sbjct: 218 KTLVQMHSNLVTTSEEVCDSFSIFGL 243


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 254 RLL*QFHNSLLTTSLRYTECFRSFGL 331
           + L Q H++L+TTS    + F  FGL
Sbjct: 218 KTLVQMHSNLVTTSEEVCDSFSIFGL 243


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 690 GLGEEEIKALTKKYP 734
           GL  EEIK L +KYP
Sbjct: 31  GLDTEEIKDLLQKYP 45


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 221 PCVLISSMALLGFTLPPDS 239


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 221 PCVLISSMALLGFTLPPDS 239


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 221 PCVLISSMALLGFTLPPDS 239


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 221 PCVLISSMALLGFTLPPDS 239


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 221 PCVLISSMALLGFTLPPDS 239


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 173 RTQKSLARVSVWLESGRYRRTQEI 244
           RT+ + AR+ VW  + R R  ++I
Sbjct: 256 RTKLTEARIQVWFSNRRARLRKQI 279


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 207 QTLTRAKDFCVRKRPN 160
           +T     D CVRKRP+
Sbjct: 9   ETAGEVLDLCVRKRPH 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,370
Number of Sequences: 336
Number of extensions: 3575
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)