Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B13
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    27   4.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   5.6  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    26   7.4  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   7.4  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   7.4  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    25   9.8  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   9.8  

>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 91  VEANLLFKCNYIRNQCP 141
           VEA LL KC+Y+  +CP
Sbjct: 71  VEARLLAKCHYVGIKCP 87


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 339 VASSSTAVKQDYNEYMWTMRKEFSEPEPSIIVEQDNITNFSK 464
           VA SS  V     E   ++  E  +P P+I      IT+F K
Sbjct: 329 VAFSSETVTSSSKERKRSVENEMLKPHPTIFESPPEITSFDK 370


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +3

Query: 531 KIKLD*GINNMESKGSQNVLSNLLNAPIAPITEDGVVYIAIKGSLHANDSSVFGLGEEEI 710
           ++K    I+ MES   Q+ L   L    A  T++    +      H+ D S   LGE ++
Sbjct: 304 RLKFQNYIHIMESDERQSKLK--LGRVRARKTKNNENTMFFDSKEHSTDESDGNLGEHDV 361

Query: 711 KALTKKYPGSGVVVNGVSIKAN 776
           K      P     +NG     N
Sbjct: 362 KRKVDSVPADETSINGFKKSVN 383


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 234 VLLYLPLSSQT--LTRAKDFCVRKRPNYL*SKCRALITDIVTL 112
           V L++P S +T  +  +K+F   K  +YL +  R  + DI  L
Sbjct: 251 VSLHVPASPETKNMISSKEFAAMKEGSYLINASRGTVVDIPAL 293


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +3

Query: 330 YKVVASSSTAVKQDYNEYMWTMRKEFSEPEPSIIVEQDNITNFSKEAMHLSNYHSNKDDE 509
           Y+ + S+     + +      + K+   P+P+  V    I N +    H+S + +  DDE
Sbjct: 729 YRYICSTPLIFPEFFKSKARDILKKILVPDPAKRVRMSAIMNHAYLRSHVSLFETYNDDE 788

Query: 510 V*TLLYFKIKL 542
             +L    I+L
Sbjct: 789 ATSLRPSPIRL 799


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 177 HKNPWRVLVSGLKAEDIEELKR 242
           H + WR+ V G+  EDI +  R
Sbjct: 37  HTHTWRIFVEGVDGEDISKWVR 58


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 454 LVMLSCSTIIEGSGSENSFLIVHIY 380
           L M  C+ I+EG  +EN  LI+ +Y
Sbjct: 432 LFMSLCTAILEGVSTENDNLILPMY 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,737
Number of Sequences: 5004
Number of extensions: 60917
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)