Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B13
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006...    32   0.63 
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128...    29   5.9  
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842...    28   7.8  

>08_02_0052 +
           11699468-11699700,11699799-11699916,11699991-11700659,
           11700741-11700842,11700921-11701181,11701838-11702009,
           11702128-11702528,11703171-11703587
          Length = 790

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 24/95 (25%), Positives = 40/95 (42%)
 Frame = +3

Query: 390 TMRKEFSEPEPSIIVEQDNITNFSKEAMHLSNYHSNKDDEV*TLLYFKIKLD*GINNMES 569
           T  K+F   E   +++++N     KE   L N   N       L  F I      N M +
Sbjct: 114 TKMKKFKNNEERKLLQKEN-EELKKENAELRNRMKNSTCRACDLPLFHIDCRHWENPMLN 172

Query: 570 KGSQNVLSNLLNAPIAPITEDGVVYIAIKGSLHAN 674
           KG+  V SNL+   ++ +      ++A   +L +N
Sbjct: 173 KGNHGVTSNLIPQAVSSLLPSSSGFVASGSNLSSN 207


>02_02_0620 +
           12210812-12210997,12212397-12212474,12212744-12212848,
           12212998-12213022,12213214-12213266,12213523-12213635,
           12213777-12213801,12214560-12214601,12214666-12214726,
           12216027-12216043,12217143-12217257,12217431-12218659
          Length = 682

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 230 RTQEICVRRLL*QFHNSLLTTSLRYTECFRSFGLQSSCF*FNSS*TRL 373
           R + IC  +L     +S++ TSL   E     GL+ +CF F +S + L
Sbjct: 591 RLKLICEEKLCESIDSSMVATSLALAEQHNCNGLKEACFEFLASPSNL 638


>12_02_0947 +
           24680119-24681497,24682213-24682275,24683380-24684239,
           24684399-24684772,24685932-24686112,24686201-24686220
          Length = 958

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 333 KVVASSSTAVKQDYNEYMWTMRKEFSEPEPSIIVEQDNITNFSKE 467
           K   SS+ +  Q  + +  TM    +EP    +VE  NI+  SKE
Sbjct: 849 KASFSSNASYPQGGDLWQGTMANHSAEPSKHFVVESSNISEQSKE 893


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,999,022
Number of Sequences: 37544
Number of extensions: 334305
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)