Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B13
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       31   0.85 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)               29   3.4  
SB_56754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 799 KEFIASSTLALMETPLTTTPDPGYFFVRAFISSSPSPNTELSFACKE 659
           ++  +S+T +    P T  PDPGY F+   +S +   N  L +A  E
Sbjct: 198 RKLASSATTSNRPKPYTEDPDPGYRFILGMLSHAMDINRRLVYAAAE 244


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +3

Query: 300  VILSALEVLGYKVVASSSTAVKQDYNEYMWTMRKEFSEPEPSIIVEQDNITNFSKEAMHL 479
            V +S  E+L +K    S    K+++ + + ++ ++ SE E  + V   + T  + E  HL
Sbjct: 1174 VSISEGELLKFKNTLQSE---KEEFEKKLSSLLEQLSEMESEVSVLNKSCTEKTGEVEHL 1230

Query: 480  SNYHSNKDDEV 512
                SN+D+E+
Sbjct: 1231 KRQLSNRDEEL 1241


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
 Frame = +3

Query: 315 LEVLGYKVVASSSTAVKQDYNEY----MWTMRKEFSEPEPSIIVEQDNITNFSKEA---- 470
           +EV+G++ + ++   + Q  +E     M +MRK +++ + S +   D + N  KE     
Sbjct: 264 VEVIGWRDLPAAGEQLIQVESENKANEMVSMRKAYAQQQKSQLTVDDVMANIFKEGEGHQ 323

Query: 471 --MHLSNYHSNKDDEV*TLLYFKIKLD*GINNMESKGSQNVLSNLLNAPIAPITEDGV 638
             + L  Y +++  +V         ++  ++ +++  S  +  ++LNA + P+TE  V
Sbjct: 324 SRVPLKGYDASEKLDVVIRADVHGSVEAIVDALKTYKSDKIKMSILNAGVGPVTESDV 381


>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
          Length = 738

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 24/119 (20%), Positives = 54/119 (45%)
 Frame = +3

Query: 291 HPCVILSALEVLGYKVVASSSTAVKQDYNEYMWTMRKEFSEPEPSIIVEQDNITNFSKEA 470
           H  ++ S L+ L Y++  SS  ++      Y   M+      +P++ V   +IT    + 
Sbjct: 128 HILLVDSRLQALLYEITPSSLQSLWSVMLNYHKVMQWH-ERYDPAMHVTGSDITGDGTDD 186

Query: 471 MHLSNYHSNKDDEV*TLLYFKIKLD*GINNMESKGSQNVLSNLLNAPIAPITEDGVVYI 647
              +    N++       Y + KLD G+N +  +G + + ++LL   ++   ++  +Y+
Sbjct: 187 EKNAEATYNRN-------YIRQKLDHGLNRIWKEGQERIKAHLLGTDLSYFKDEDFIYV 238


>SB_56754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 817 LYPS*XKEFIASSTLALMETPLTTTPDPGYFFVRAFISSSPSPNTELS 674
           ++ S  K+ +     AL   PLT+TP P        +SS+P P   LS
Sbjct: 3   MHKSLQKKIVYKGLTALRLLPLTSTPIPKQGLSTPILSSTPIPKQGLS 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,545,986
Number of Sequences: 59808
Number of extensions: 412279
Number of successful extensions: 1025
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)