Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B13
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.85 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.9  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   7.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 138 PYILIRGNLASYGHKNPWRVLVSGLKAEDIEELKRFACGGYC 263
           P++ +R  +A      P  +L       D E  K F C GYC
Sbjct: 423 PFVYVR-EIAFSESCLPEEILCPHFNVTDGETTKTFCCKGYC 463


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 702 EEIKALTKKYPGSGVVVNGVSI 767
           +EI  LT   PG GVV NG  I
Sbjct: 368 DEIVMLTLTLPGIGVVYNGDEI 389


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 417 EPSIIVEQDNITNFSKEAMHLSNYHSNKDDEV*TLLYFKI 536
           EP II   ++++N      + +NY++N +     L Y+ I
Sbjct: 78  EPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNI 117


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 754 LTTTPDPGYFFVRAFISSSPSPNTELSFACKEPFI 650
           +TT P P      A I+++P    +L+    +P +
Sbjct: 824 ITTPPTPNLLRYFASIATNPKEQAQLNLLASDPAV 858


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 272 PCVLISSMALLGFTLPPDS 290


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV++S++ +LG+ +   S
Sbjct: 272 PCVLISSMALLGFTLPPDS 290


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 294 PCVILSALEVLGYKVVASS 350
           PCV+++++ VLG+ +   S
Sbjct: 241 PCVLIASMAVLGFTLPPDS 259


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = +2

Query: 29  IVPLVNLYFVNKLFI*TFIVQWKQIFFLSV 118
           ++ LV L  +++L    ++ QW++++FL++
Sbjct: 213 LLSLVRLLRLSRLV--RYVSQWEEVYFLNM 240


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 606 APIAPITEDGVVYIAIKGSLHANDSSVFGLGEE 704
           +P+  +TE+  +Y     S   N    F LGEE
Sbjct: 38  SPVVELTENNGLYTLKTTSPFKNTEIKFKLGEE 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,549
Number of Sequences: 438
Number of extensions: 4256
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)