Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B13
         (821 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62710.1 68414.m07078 vacuolar processing enzyme beta / beta-...    29   3.7  
At5g17570.1 68418.m02061 tatD-related deoxyribonuclease family p...    29   4.9  
At4g40080.1 68417.m05674 epsin N-terminal homology (ENTH) domain...    28   8.6  

>At1g62710.1 68414.m07078 vacuolar processing enzyme beta / beta-VPE
           identical to SP|Q39044 Vacuolar processing enzyme,
           beta-isozyme precursor (EC 3.4.22.-) (Beta-VPE)
           {Arabidopsis thaliana}
          Length = 486

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 156 GNLASYGHKNPW---RVLVSGLKAEDIEELKRFACGGYCDNSTIVYLQHPCVI 305
           G+L  YG K+      V  +G+  E +EE    ACGGY   S   Y  HP ++
Sbjct: 433 GSLTQYGMKHMRAFANVCNNGVSKELMEEASTAACGGY---SEARYTVHPSIL 482


>At5g17570.1 68418.m02061 tatD-related deoxyribonuclease family
           protein contains Pfam profile PF01026: TatD related
           DNase
          Length = 325

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 282 YLQHPCVILSALEVLGYKVVASSSTAVKQDYNEYMWTMRKEFSEPEPSII 431
           +LQ P +I  A +++   V +  S       +E  W++ KE     PS++
Sbjct: 9   HLQDPRIITKAPQIISSAVASGVSAFAVNGVSEKDWSLVKEMGAKYPSVV 58


>At4g40080.1 68417.m05674 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to CLATHRIN
           COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
           SWISSPROT:Q61548
          Length = 365

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 279 VYLQHPCVILSALEVLGYKVVASSSTAVKQDYNE 380
           +YL+H   +LS   ++G+ + ++SST  K++Y E
Sbjct: 151 LYLEH---LLSTSRIMGFFISSTSSTIHKEEYEE 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,490
Number of Sequences: 28952
Number of extensions: 299061
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)