Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_B11
(775 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contain... 89 3e-18
At3g07680.1 68416.m00921 emp24/gp25L/p24 family protein similar ... 71 9e-13
At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar ... 69 3e-12
At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar ... 67 1e-11
At3g10780.1 68416.m01298 emp24/gp25L/p24 family protein similar ... 67 1e-11
At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar ... 65 6e-11
At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar ... 65 6e-11
At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar ... 61 9e-10
At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar ... 58 5e-09
At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar ... 58 6e-09
At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar ... 53 2e-07
At2g03040.1 68415.m00257 transmembrane protein-related low simil... 35 0.069
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai... 30 1.5
At1g75850.1 68414.m08810 vacuolar protein sorting-associated pro... 29 2.6
At3g02430.1 68416.m00230 hypothetical protein contains Pfam prof... 29 4.5
At3g21630.1 68416.m02728 protein kinase family protein contains ... 28 6.0
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 28 6.0
At2g37500.1 68415.m04599 arginine biosynthesis protein ArgJ fami... 28 7.9
At1g06660.1 68414.m00706 expressed protein 28 7.9
>At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contains
weak similarity to transmembrane protein (GI:1212965)
[Homo sapiens]
Length = 214
Score = 89.0 bits (211), Expect = 3e-18
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 8/193 (4%)
Frame = +3
Query: 141 LLNLVSNAYSYTVTVDAHAEECFYENV--EADTKLGLSFEIAEGGFL------DIDVIIL 296
LLN ++ S +VTV+ EEC E V E DT G +F + + +D +
Sbjct: 18 LLNSINQISSLSVTVND--EECVQEYVLYEGDTVSG-NFVVVDHDIFWGSDHPGLDFTVT 74
Query: 297 GPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNE 476
P GN++ + S + F AP +G Y +CF N S TP+ V F + +G +
Sbjct: 75 SPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYS--TPETVSFYIHVGHIPNEHDLA 132
Query: 477 NEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLV 656
+ + + I EL L ++ +Q+Y++ RD HR NEST RV+ +++ E L
Sbjct: 133 KDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVIFYTVGEYIFLAA 192
Query: 657 MTIGQVYYLKRFF 695
+ QV Y+++ F
Sbjct: 193 ASGLQVLYIRKLF 205
>At3g07680.1 68416.m00921 emp24/gp25L/p24 family protein similar to
SP|Q15363 Cop-coated vesicle membrane protein p24
precursor (p24A) {Homo sapiens}; contains Pfam profile
PF01105: emp24/gp25L/p24 family
Length = 208
Score = 70.9 bits (166), Expect = 9e-13
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 7/174 (4%)
Frame = +3
Query: 198 EECFYENVEAD-TKLGLSFEIAEGG----FLD--IDVIILGPDGNVIHKAERESSGIYTF 356
EECF E + L +SF + + F + +D++I GP G IH + S + F
Sbjct: 29 EECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPTGEQIHDFREQISAKHDF 88
Query: 357 SAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATTLR 536
G Y +CF+NK S + + F++++G + + L + I +L L
Sbjct: 89 VVQKKGVYRFCFTNK--SPYHETIDFDVQLGHFAYYDQHAKDEHFTPLMEQISKLEEALY 146
Query: 537 TIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFFE 698
I+ +Q +++ + +NE+ + R V ++FE+ L+ + QVY L+R FE
Sbjct: 147 NIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQVYLLRRLFE 200
>At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 69.3 bits (162), Expect = 3e-12
Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 6/211 (2%)
Frame = +3
Query: 99 KMKYLRISQWLVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGG--- 269
K K + + L + +L + +TV +C E ++++ + + +
Sbjct: 2 KKKMIPTTILLSALIFSLSPICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHSI 61
Query: 270 FLDIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIG 449
F + V + P G V+H E ++G + F+ +G Y CF S K N++
Sbjct: 62 FPTVSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWK 121
Query: 450 EPQTKSGNENEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVV 620
++ A K+E + K+L + I + Y++ R+ R ++E TNSRV
Sbjct: 122 TGIAAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVA 181
Query: 621 MWSIFEASVLLVMTIGQVYYLKRFFEVQRVV 713
+SI + +V++ Q+ YLK++FE ++++
Sbjct: 182 WYSIMSLGICIVVSGLQILYLKQYFEKKKLI 212
>At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 217
Score = 67.3 bits (157), Expect = 1e-11
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Frame = +3
Query: 279 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQ 458
I V + P GN +H E + G + F+ +G Y CF S K V N++
Sbjct: 70 ISVKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGI 129
Query: 459 TKSGNENEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWS 629
+ A K+E + I++L + I + Y++ R+ R+++E TNSRV +S
Sbjct: 130 AAKDWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYS 189
Query: 630 IFEASVLLVMTIGQVYYLKRFFEVQRVV 713
I V + ++ QV YLK++FE ++++
Sbjct: 190 IMSLGVCIAVSGFQVLYLKQYFEKKKLI 217
>At3g10780.1 68416.m01298 emp24/gp25L/p24 family protein similar to
SP|O35587 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Mesocricetus
auratus}; contains Pfam profile: PF01105 emp24/gp25L/p24
family; contains non-consensus TG acceptor splice site
at exon 3
Length = 217
Score = 66.9 bits (156), Expect = 1e-11
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Frame = +3
Query: 177 VTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDI----DVIILGPDGNVIHKAERESSG 344
+TV E C YE ++A+ + L + + F + DV + P G ++K + G
Sbjct: 29 LTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGPTLDVRVTSPYGKELYKIANVTHG 88
Query: 345 IYTFSAPTAGKYTYCFSNKMSSMTPKV---VMFNLEIGEPQTKSGNENEADHNKLEDMIK 515
F+ +G + C + V V+ +L+ ++ A K+E M
Sbjct: 89 QAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKMGIRAKDWDSVAKKEKIEAMEL 148
Query: 516 ELATTLR---TIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLK 686
E+ + I+ + Y+++R+ R INE TN+RV + V +V++I QV YLK
Sbjct: 149 EIRRSTEYASAIRANILYLRIREAYMREINEKTNTRVNQLGLMSLGVAIVVSISQVLYLK 208
Query: 687 RFFEVQRVV 713
R+F ++++
Sbjct: 209 RYFLKKKLI 217
>At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105:
emp24/gp25L/p24 family
Length = 214
Score = 64.9 bits (151), Expect = 6e-11
Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 15/211 (7%)
Frame = +3
Query: 126 WLVVTLLNLVSNAYSYTVTVDAHA--EECFYENVEADTKLGLSFEIA---EGGFLD---- 278
W ++ +L + S S+++ D H+ +C E++++++ + I EG L
Sbjct: 9 WTMLLILAIWS-PISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNIDNPHEGQALPQTHK 67
Query: 279 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVM---FNLEIG 449
I V + GN H AE+ SG + FSA AG Y CF+ P+V + F + G
Sbjct: 68 ISVKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFT--AVDHKPEVSLSIDFEWKTG 125
Query: 450 EPQTKSGNENEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVV 620
Q+KS N A +++E M +K L T+ +I + Y++ R+ + +N STN+++
Sbjct: 126 V-QSKSW-ANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMA 183
Query: 621 MWSIFEASVLLVMTIGQVYYLKRFFEVQRVV 713
S+ V + + Q +LK FFE ++V+
Sbjct: 184 WLSVLSFFVCIGVAGMQFLHLKTFFEKKKVI 214
>At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar to
SP|O35587 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Mesocricetus
auratus}; contains Pfam profile PF01105: emp24/gp25L/p24
family
Length = 216
Score = 64.9 bits (151), Expect = 6e-11
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Frame = +3
Query: 291 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 470
+ P GN +H E + G + F+ AG Y CF S + ++
Sbjct: 73 VTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAAKD 132
Query: 471 NENEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEA 641
++ A K+E + ++ L + +I+ + Y++ R+ R ++E+TNSRV +SI
Sbjct: 133 WDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRVAWFSIMSL 192
Query: 642 SVLLVMTIGQVYYLKRFFEVQRVV 713
V +V+ Q+ YLKR+F ++++
Sbjct: 193 GVCVVVVGSQILYLKRYFHKKKLI 216
>At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 170
Score = 60.9 bits (141), Expect = 9e-10
Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Frame = +3
Query: 279 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSN-KMSSMTPKVVMFNLEIGEP 455
I V ++ P G +H+A++ +G ++F+A G Y C + T + F+ + G
Sbjct: 24 IIVKVMPPQGKNLHEADKVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVH 83
Query: 456 QTKSGN-ENEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSI 632
+ N ++ + +E +K L T+ +I + Y++ R+ + +N STNS++ W
Sbjct: 84 SKEWTNVAKKSQVDMMEYQVKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMA-WLS 142
Query: 633 FEASVLLVMTIG-QVYYLKRFFEVQRVV 713
F + V+ + G Q ++LK FFE ++++
Sbjct: 143 FGSLVVCLSVAGLQFWHLKTFFEKKKLI 170
>At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 214
Score = 58.4 bits (135), Expect = 5e-09
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Frame = +3
Query: 279 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVM---FNLEIG 449
I + + GN H AE SG + F+A +G Y C++ P+V + F+ G
Sbjct: 68 ISIRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYT--AVDHKPEVTLSIDFDWRTG 125
Query: 450 -EPQTKSGNENEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMW 626
+ ++ S ++ +E +K L T+ +I + Y++ R+ +++N +TNS++
Sbjct: 126 VQSKSWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNSKMAWL 185
Query: 627 SIFEASVLLVMTIGQVYYLKRFFEVQRVV 713
S V L + Q +LK FFE ++V+
Sbjct: 186 SFLSLFVCLGVAGMQFVHLKTFFEKKKVI 214
>At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 58.0 bits (134), Expect = 6e-09
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Frame = +3
Query: 279 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSN-KMSSMTPKVVMFNLEIGEP 455
+ V + P G H+++ SG ++F A G Y CFS T ++ F+ G
Sbjct: 66 VTVRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETTLIIDFDWRTGI- 124
Query: 456 QTKSGNENEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMW 626
TK + N A +++E M +K+L T+ I + Y++ R+ ++N +TNS++
Sbjct: 125 HTKDWS-NVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMHNLNIATNSKMAWL 183
Query: 627 SIFEASVLLVMTIGQVYYLKRFFEVQRVV 713
S +V L + Q ++LK FF+ ++++
Sbjct: 184 SFVSLAVCLSVAGLQFWHLKTFFQKKKLI 212
>At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105
emp24/gp25L/p24 family
Length = 204
Score = 52.8 bits (121), Expect = 2e-07
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Frame = +3
Query: 285 VIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPK-VVMFNLEIG-EPQ 458
V + P G H AE SG + F+A G Y CF T K V F + G E +
Sbjct: 60 VTVSSPKGKSHHHAENVESGKFVFTAEETGDYMTCFVAPGYRPTAKFAVDFEWKSGVEAK 119
Query: 459 TKSGNENEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFE 638
+ LE +++L TI + + R+R + +N STNSR+ S+
Sbjct: 120 DWTTIAKRGQITMLEVEVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLLS 179
Query: 639 ASVLLVMTIGQVYYLKRFFEVQRVV 713
V + + Q+ +LK F E ++++
Sbjct: 180 FVVTMSVAGLQLRHLKSFLERKKLL 204
>At2g03040.1 68415.m00257 transmembrane protein-related low
similarity to SP|Q28735|TM21_RABIT Transmembrane protein
Tmp21 precursor (21 kDa Transmembrane trafficking
protein) (Integral membrane protein p23) {Oryctolagus
cuniculus}
Length = 166
Score = 34.7 bits (76), Expect = 0.069
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = +3
Query: 279 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSN-KMSSMTPKVVMFNLEIGEP 455
I V ++ P G +H+A+ +G ++F+A G Y C + T + F+ + G
Sbjct: 67 IIVKVMPPQGKNLHEADNVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVH 126
Query: 456 QTKSGN-ENEADHNKLEDMIKELATTLRTIKHDQEYMQVR 572
+ N ++ + +E +K L T+ +I + Y++ R
Sbjct: 127 SKEWTNVAKKSQVDMMEYQVKTLMDTVISIHEEMYYLRER 166
>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
Pfam domain, PF04935: Surfeit locus protein 6
Length = 386
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 471 NENEADHNKLEDMIKELATTLRTIKHDQE--YMQVRDRIHRSINESTNSR 614
++ E D+N+L D + T K D+ Y ++R+R+HR I+E R
Sbjct: 135 SKKETDNNRLNDDDSKEETDNNRQKDDRSVTYEELRERLHRKIDELKGGR 184
>At1g75850.1 68414.m08810 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 838
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 324 AERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHN 494
A R SSG T KY Y F +TP + +E+ + +S N N H+
Sbjct: 752 ATRGSSGPVTLFVEILNKYIYFFEKGNPHITPSDIQSLIELINNEMQSDNGNTTIHS 808
>At3g02430.1 68416.m00230 hypothetical protein contains Pfam profile
PF05078: Protein of unknown function (DUF679)
Length = 219
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 105 KY-LRISQWLVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTK 236
KY +R W+ TL LV A + D + +CFY + EA+TK
Sbjct: 139 KYRMRFVDWIHATLSVLVFGAVALR---DKYITDCFYPSPEAETK 180
>At3g21630.1 68416.m02728 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 617
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 177 VTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDVIILGPDGNVIHKAERESS 341
++VD E E +A LSF+I +GGF + L + I K + E+S
Sbjct: 302 ISVDKSVEFSLEELAKATDNFNLSFKIGQGGFGAVYYAELRGEKAAIKKMDMEAS 356
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 216 NVEADTKLGLSFEIAEGGFLDIDVIILGPDGNVIHKAERESS 341
NVE D K G + ++ D DV+ + D + K+E ES+
Sbjct: 84 NVEKDLKEGENVKVDAPSIADDDVLGVSQDSQTLEKSELEST 125
>At2g37500.1 68415.m04599 arginine biosynthesis protein ArgJ family
contains Pfam profile: PF01960 ArgJ family
Length = 468
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 327 ERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLED 506
E ++G++T + A YC +S T + V+ N G+ +G +A + + D
Sbjct: 98 EAVAAGVFTTNVVAAAPVVYCKKVLETSKTARAVLIN--AGQANAATG---DAGYQDMLD 152
Query: 507 MIKELATTLR 536
+ +AT L+
Sbjct: 153 CVGSIATLLK 162
>At1g06660.1 68414.m00706 expressed protein
Length = 481
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 114 RISQWLVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADT 233
RI V ++ N++ NA Y V D+H + E +EA+T
Sbjct: 290 RIRSQFVHSVSNIMENASLYKVYKDSHEGLDYEEQIEAET 329
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,983,730
Number of Sequences: 28952
Number of extensions: 318249
Number of successful extensions: 848
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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