Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_B10
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 33 0.21
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 1.5
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 1.5
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 1.9
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 1.9
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 1.9
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical pr... 28 5.9
U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +1
Query: 250 DASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 429
D A + +S + P+ P+ + + Y +++P PLP P ++A +++
Sbjct: 946 DEQPASESTSAFDIPEHPPVIVPFRNAPIVYSSQTSNIPQIHPPLPPPRFLAMPMQF-SG 1004
Query: 430 HPPKPEVGQRI 462
HPP +G I
Sbjct: 1005 HPPPVIMGPPI 1015
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +1
Query: 250 DASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 429
D A + +S + P+ P+ + + Y +++P PLP P ++A +++
Sbjct: 946 DEQPASESTSAFDIPEHPPVIVPFRNAPIVYSSQTSNIPQIHPPLPPPRFLAMPMQF-SG 1004
Query: 430 HPPKPEVGQRI 462
HPP +G I
Sbjct: 1005 HPPPVIMGPPI 1015
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 280 GYTAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPIP-DYIARAIEYIRTHP 435
G+++P +P TY+ + Y PS + PT+P P P + + +Y T P
Sbjct: 1772 GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1825
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 286 TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 435
T+P +P TY+ + Y+ G + P++P P P Y + Y T P
Sbjct: 1692 TSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSP 1742
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 280 GYTAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPIP-DYIARAIEYIRTHP 435
G+++P +P TY+ + Y PS + PT+P P P + + +Y T P
Sbjct: 1779 GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1832
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 286 TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 435
T+P +P TY+ + Y+ G + P++P P P Y + Y T P
Sbjct: 1699 TSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSP 1749
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Frame = +1
Query: 118 TGEADAQIVSQDADVFPDKYQYQYQTSNG--ISGQEQGVLVNEGREDASIAVQGSSGYTA 291
TG I D + P + T NG I E+G + G + +A S Y
Sbjct: 5026 TGNVIVPITKPDGTLLPTDSTGSFVTENGDRIEFNEEGKPL--GPDGEVLATDASGNYVY 5083
Query: 292 PDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 390
P G+ ++ T + P G LPT + PI
Sbjct: 5084 P-GSVVEPTAEPQEVTHGPDGQVLPTDASGKPI 5115
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 130 DAQIVSQDAD---VFPDKYQYQYQTSNGISGQEQGVLVNEGREDASIAVQGSSGYTAPDG 300
D QI+S DA V+PD + + G+ ++ G + ++ S PDG
Sbjct: 2984 DGQILSTDASGNYVYPDPGLDSQILTTDVYGKPIYTVI--GPDGTALPTDASGAAIGPDG 3041
Query: 301 TPIQITYTADANGYQPSGAHLPT 369
TPI T + G+ LPT
Sbjct: 3042 TPISTDETGEP--LDKDGSILPT 3062
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Frame = +1
Query: 118 TGEADAQIVSQDADVFPDKYQYQYQTSNG--ISGQEQGVLVNEGREDASIAVQGSSGYTA 291
TG I D + P + T NG I E+G + G + +A S Y
Sbjct: 5071 TGNVIVPITKPDGTLLPTDSTGSFVTENGDRIEFNEEGKPL--GPDGEVLATDASGNYVY 5128
Query: 292 PDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 390
P G+ ++ T + P G LPT + PI
Sbjct: 5129 P-GSVVEPTAEPQEVTHGPDGQVLPTDASGKPI 5160
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 130 DAQIVSQDAD---VFPDKYQYQYQTSNGISGQEQGVLVNEGREDASIAVQGSSGYTAPDG 300
D QI+S DA V+PD + + G+ ++ G + ++ S PDG
Sbjct: 3029 DGQILSTDASGNYVYPDPGLDSQILTTDVYGKPIYTVI--GPDGTALPTDASGAAIGPDG 3086
Query: 301 TPIQITYTADANGYQPSGAHLPT 369
TPI T + G+ LPT
Sbjct: 3087 TPISTDETGEP--LDKDGSILPT 3107
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Frame = +1
Query: 118 TGEADAQIVSQDADVFPDKYQYQYQTSNG--ISGQEQGVLVNEGREDASIAVQGSSGYTA 291
TG I D + P + T NG I E+G + G + +A S Y
Sbjct: 5071 TGNVIVPITKPDGTLLPTDSTGSFVTENGDRIEFNEEGKPL--GPDGEVLATDASGNYVY 5128
Query: 292 PDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 390
P G+ ++ T + P G LPT + PI
Sbjct: 5129 P-GSVVEPTAEPQEVTHGPDGQVLPTDASGKPI 5160
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 130 DAQIVSQDAD---VFPDKYQYQYQTSNGISGQEQGVLVNEGREDASIAVQGSSGYTAPDG 300
D QI+S DA V+PD + + G+ ++ G + ++ S PDG
Sbjct: 3029 DGQILSTDASGNYVYPDPGLDSQILTTDVYGKPIYTVI--GPDGTALPTDASGAAIGPDG 3086
Query: 301 TPIQITYTADANGYQPSGAHLPT 369
TPI T + G+ LPT
Sbjct: 3087 TPISTDETGEP--LDKDGSILPT 3107
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 343 QPSGAHLPTTPAPLPIPDYIARAIE-YIRTHPPKPEVGQR 459
+PS P+ P P P+P+ I ++ + P KP V +R
Sbjct: 47 EPSSPTRPSEPIPPPLPEPIPELVQILLAAEPNKPSVPKR 86
>Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical
protein W04D2.4 protein.
Length = 624
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 145 SQDADVFPDKYQYQYQTSNGISGQEQGVLVNEGREDASI 261
S + VFP + +YQY+ G+ EQ L + G D ++
Sbjct: 558 SSSSTVFPTRSKYQYRPGKGLERAEQDYL-SRGNGDITL 595
>U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical
protein B0244.10 protein.
Length = 628
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 603 FFFFLPVFLTLIEVYFTYCETRHINDRQCYGLRCFNNSRPYQLSYNLNTLADL--WLGW 433
+F L FL + F C T + ++ +C N S P QL +NT L W+G+
Sbjct: 268 WFIALYRFLFQMTNIFENCSTHYSFEKNLQ--KCVNASNPCQLLQKMNTAHSLMIWMGF 324
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,079,475
Number of Sequences: 27780
Number of extensions: 285056
Number of successful extensions: 956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -