Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B09
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   1.7  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   3.8  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   6.7  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   6.7  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.9  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    25   8.9  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   8.9  

>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -2

Query: 248 SMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGP 123
           S  SARS AR+        RS+S        + NT   PP P
Sbjct: 204 SRSSARSTARSAPRSTQRSRSSSANPVTTPPVNNTLLTPPAP 245


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 110 MWSGEAQEVARTYCGSHLADTLADLCFG 193
           +W  E   + R Y G  L + L   CFG
Sbjct: 409 LWDLEENRIVRQYMGHKLGNFLIGSCFG 436


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 294 RKQHSSTTPRFPRDPKYA 241
           +K+H +  P FPRD +Y+
Sbjct: 140 KKEHFNKKPSFPRDTEYS 157


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 HLADTLADLCFGVVKRGGAQYAPYFWQKAYLGSRGKR 268
           HL DT  D  FG+V      +  Y  Q  YLG R  R
Sbjct: 277 HLPDTTVDAAFGLVSLFILFFTKYMCQ--YLGKRYPR 311


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 312 TSSVQGRKQ--HSSTTPRFPRDPKYAFCQK*GAY*APPRFTTPKHKSASVSAK*DPQ 148
           +SS+Q  ++  H ST+     DP      K   + + PR +TP   S  VSA  +P+
Sbjct: 246 SSSLQHTRENLHDSTSSLRDHDPSLLSSSK--FFRSSPRCSTPSVSSTFVSATSEPE 300


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 209 HRVSPLRSTSRRVYPP 162
           HR++PLR+   ++YPP
Sbjct: 89  HRMTPLRNVWPKLYPP 104


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 188 STSRRVYPPSEIRNTYALPPGP 123
           S + R Y PS  R TY++PP P
Sbjct: 68  SKATRPYIPSYTRLTYSVPPLP 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,880
Number of Sequences: 5004
Number of extensions: 32429
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)