Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B09
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377...    31   0.42 
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810...    31   0.73 
03_02_0026 - 5086596-5086755,5087035-5087105,5087407-5087466,508...    29   2.9  
07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604...    28   5.1  
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213...    27   6.8  
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150...    27   8.9  

>03_05_1019 +
           29736644-29736709,29737156-29737515,29737595-29737735,
           29737912-29738044,29738344-29738457,29738553-29738701,
           29740815-29740907,29741019-29741079,29741180-29741512,
           29742149-29742224,29742322-29742421,29743300-29743369,
           29743987-29744082,29744355-29744402,29744427-29744658,
           29745186-29745246,29745265-29745375
          Length = 747

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +3

Query: 207 VVLSTRPTSGRKHTWDLAGNAA*WTNAVSGLAHLTFSHRTADRVFLRDLQTVLNLFQIHF 386
           ++++TRPT+G    W +A     W  A++G  ++   H TA+   L     +  +  +  
Sbjct: 243 LLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLG 302

Query: 387 NKYHSFS 407
              H+F+
Sbjct: 303 FDPHAFT 309


>09_04_0323 -
           16679565-16679939,16680328-16680660,16680721-16681032,
           16683590-16683825,16683972-16684239
          Length = 507

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = -2

Query: 329 RSTMRERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIR 150
           RS    RQ  +      P+        ++L +   ART   R+ P R  S   +PP    
Sbjct: 16  RSAAGRRQAARDKGKEEPVTLPPLPPAAVLGSSPAART---RLRPRRRPSSAPHPPPAAA 72

Query: 149 NTYALPPGPHLTTS 108
           +T AL P PH   S
Sbjct: 73  STSALRPRPHTQNS 86


>03_02_0026 -
           5086596-5086755,5087035-5087105,5087407-5087466,
           5087625-5087684,5088012-5088054,5088130-5088221,
           5088304-5088372,5088458-5088502,5089209-5089317,
           5089579-5089679,5089769-5089861,5089936-5089996,
           5090084-5090187,5091592-5091972
          Length = 482

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 100 AQPDVVR*GPGGSAYVLRISLGGYTRRLVLRSGETRWCSVRALLLAESI 246
           A P ++R  P  S + +   LGG  R+ + R+G  +  S RAL+L E +
Sbjct: 427 AIPVILRSSPDRSGFSVSDCLGGTVRQTIARAGRLQTWS-RALILLEPL 474


>07_01_0780 +
           6047375-6047494,6047603-6047713,6047804-6047926,
           6048035-6048168,6048273-6049551
          Length = 588

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 280 VHYAAFPARSQVCFLPEVGRVLSTTAFHHSEAQVGECIR 164
           +H A F  R    F+P++ R+L   + +  EA+   CI+
Sbjct: 270 LHQAPFDDRCHCHFIPDMDRILGIQSRNDDEARWRNCIK 308


>09_03_0177 -
           13120816-13120941,13121032-13121137,13121231-13121305,
           13121385-13121461,13122462-13122549,13122638-13122699,
           13122807-13122863,13122960-13123049,13123186-13123251,
           13123530-13123619,13123711-13123804,13123915-13124213
          Length = 409

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 328 RIEYFYVTCKLY*IYFKFILINIIHSL 408
           RI   YVTC+L+ IYF+   +++  S+
Sbjct: 167 RIGALYVTCQLFKIYFRLGTVHLCRSV 193


>03_06_0367 -
           33413530-33413710,33414347-33414681,33414908-33415023,
           33415107-33415235,33415657-33415723,33415780-33415854,
           33416054-33416149,33416404-33416592
          Length = 395

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 140 RTYCGSH-LADTLADLCFGVV 199
           R Y G H L D +A +CFGVV
Sbjct: 144 RIYLGMHSLIDVIAGICFGVV 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,688,440
Number of Sequences: 37544
Number of extensions: 224893
Number of successful extensions: 782
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)