Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B09
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70683-4|CAC42282.1|  109|Caenorhabditis elegans Hypothetical pr...    39   0.002
AF070472-1|AAC33275.1|  109|Caenorhabditis elegans insulin-like ...    39   0.002
Z69718-5|CAA93539.1|  236|Caenorhabditis elegans Hypothetical pr...    32   0.21 
Z69716-8|CAA93530.1|  236|Caenorhabditis elegans Hypothetical pr...    32   0.21 
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    28   3.4  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    28   3.4  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    28   3.4  

>Z70683-4|CAC42282.1|  109|Caenorhabditis elegans Hypothetical
           protein F13B12.5 protein.
          Length = 109

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = +2

Query: 83  FFVLIVLNLMWSGEAQEVARTYCGSHLADTLA-----DLCFGVV--KRGGAQ-YAPYFWQ 238
           FF  + + L+ S    + +   CGS L  TL       LC G+   KR   Q YAP    
Sbjct: 13  FFGFLAILLLSSPTPSDASIRLCGSRLTTTLLAVCRNQLCTGLTAFKRSADQSYAPTTRD 72

Query: 239 KAYLGSRGKRG-VVDECCFRPCTLDVLASYC 328
             ++  + KRG +  ECC + C+   L ++C
Sbjct: 73  LFHIHHQQKRGGIATECCEKRCSFAYLKTFC 103


>AF070472-1|AAC33275.1|  109|Caenorhabditis elegans insulin-like
           peptide protein.
          Length = 109

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = +2

Query: 83  FFVLIVLNLMWSGEAQEVARTYCGSHLADTLA-----DLCFGVV--KRGGAQ-YAPYFWQ 238
           FF  + + L+ S    + +   CGS L  TL       LC G+   KR   Q YAP    
Sbjct: 13  FFGFLAILLLSSPTPSDASIRLCGSRLTTTLLAVCRNQLCTGLTAFKRSADQSYAPTTRD 72

Query: 239 KAYLGSRGKRG-VVDECCFRPCTLDVLASYC 328
             ++  + KRG +  ECC + C+   L ++C
Sbjct: 73  LFHIHHQQKRGGIATECCEKRCSFAYLKTFC 103


>Z69718-5|CAA93539.1|  236|Caenorhabditis elegans Hypothetical
           protein W06D11.1 protein.
          Length = 236

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = -2

Query: 284 IRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGPHLTT 111
           +R +  ++  + S+++ R  A+  + R S L +TS+R++   E   +Y LPP  H+TT
Sbjct: 14  VRSIENMAGTLHSLVALRLFAKDMNTR-SQLVATSQRLHKELEPDKSYPLPPLSHITT 70


>Z69716-8|CAA93530.1|  236|Caenorhabditis elegans Hypothetical
           protein W06D11.1 protein.
          Length = 236

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = -2

Query: 284 IRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGPHLTT 111
           +R +  ++  + S+++ R  A+  + R S L +TS+R++   E   +Y LPP  H+TT
Sbjct: 14  VRSIENMAGTLHSLVALRLFAKDMNTR-SQLVATSQRLHKELEPDKSYPLPPLSHITT 70


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 317 RERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRR 174
           R R       S  P RR SR      S RSR+R+     SP+R + RR
Sbjct: 88  RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRR 135


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 317 RERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRR 174
           R R       S  P RR SR      S RSR+R+     SP+R + RR
Sbjct: 88  RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRR 135


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 317 RERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRR 174
           R R       S  P RR SR      S RSR+R+     SP+R + RR
Sbjct: 88  RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRR 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,204,382
Number of Sequences: 27780
Number of extensions: 188882
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)