Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_B09
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42620.1 68418.m05188 expressed protein 30 1.1
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At2g19560.1 68415.m02285 proteasome protein-related weak similar... 28 3.2
At5g50900.1 68418.m06310 armadillo/beta-catenin repeat family pr... 28 4.3
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi... 27 5.7
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 27 7.5
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 27 7.5
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 27 7.5
At3g52240.1 68416.m05741 expressed protein 27 9.9
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 207 VVLSTRPTSGRKHTWDLAGNAA*WTNAVSGLAHLTFSHRTAD 332
++++TRPT+G W +A W A++G ++ H T++
Sbjct: 241 LLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTSE 282
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -2
Query: 251 PSMLSARSRARTEHHRVSP-----LRSTSRRVYPPSEIRNTYALPPG 126
PS L+ R + HH +P +R + +YP + +Y +PPG
Sbjct: 246 PSQLNPRDHYYSHHHHPAPPPVQGMRGQNATLYPHTASSASYRVPPG 292
>At2g19560.1 68415.m02285 proteasome protein-related weak similarity
to 26S proteasome non-ATPase regulatory subunit 3 (26S
proteasome regulatory subunit S3) (p58) (Transplantation
antigen P91A) (Tum-P91A antigen) (Swiss-Prot:P14685)
[Mus musculus]
Length = 413
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 328 RIEYFYVTCKLY*IYFKFILINIIHSL 408
R+ YVTC+L+ YFK +N+ S+
Sbjct: 169 RVGALYVTCQLFKTYFKLGTVNLCRSV 195
>At5g50900.1 68418.m06310 armadillo/beta-catenin repeat family
protein armadillo/beta-catenin-like repeats,
Pfam:PF00514
Length = 555
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +2
Query: 86 FVLIVLNLMWSGEAQEVARTYCGSHLADTLADLCFGVVKRGGAQYAPYFW 235
FVLI + + AQE A C ++L DL VV+ GG Q FW
Sbjct: 314 FVLISMVSSGTSLAQENA-VGCLANLTSGDEDLMISVVREGGIQCLKSFW 362
>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 958
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 218 TEHHRVSPLRSTSRRVYPPSEIRNTYALP 132
++H RV+ +RS S R YPP N P
Sbjct: 66 SDHLRVNSVRSKSSRTYPPPTQPNAVVSP 94
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.1 bits (57), Expect = 7.5
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 329 RSTMRERQVCKAGNSIRPLRRVSREIPSMLSARSRA-RTEHHRVSPLRSTSRRVYPPSEI 153
RS R R K+ + R R VSR S +RSR+ + + R SP +STSR P S+
Sbjct: 202 RSPSRGRSYSKSRSRSRG-RSVSRS-RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKS 259
Query: 152 RN 147
R+
Sbjct: 260 RS 261
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 27.1 bits (57), Expect = 7.5
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 329 RSTMRERQVCKAGNSIRPLRRVSREIPSMLSARSRA-RTEHHRVSPLRSTSRRVYPPSEI 153
RS R R K+ + R R VSR S +RSR+ + + R SP +STSR P S+
Sbjct: 202 RSPSRGRSYSKSRSRSRG-RSVSRS-RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKS 259
Query: 152 RN 147
R+
Sbjct: 260 RS 261
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.1 bits (57), Expect = 7.5
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 329 RSTMRERQVCKAGNSIRPLRRVSREIPSMLSARSRA-RTEHHRVSPLRSTSRRVYPPSEI 153
RS R R K+ + R R VSR S +RSR+ + + R SP +STSR P S+
Sbjct: 202 RSPSRGRSYSKSRSRSRG-RSVSRS-RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKS 259
Query: 152 RN 147
R+
Sbjct: 260 RS 261
>At3g52240.1 68416.m05741 expressed protein
Length = 680
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 242 LSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGPHLTT 111
LS + + + H R S S P NTYALP P +T
Sbjct: 435 LSLQEKVNSLHIRNPDCHSESSYPSTPGSYMNTYALPMEPAFST 478
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,545,169
Number of Sequences: 28952
Number of extensions: 174407
Number of successful extensions: 498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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